Rosa chinensis (China rose): 112203272
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Entry
112203272 CDS
T06020
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
rcn
Rosa chinensis (China rose)
Pathway
rcn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112203272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcn03041
]
112203272
Enzymes [BR:
rcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112203272
Spliceosome [BR:
rcn03041
]
Complex C
Other components
Step II factors
112203272
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
WHD_HA2
AAA_22
AAA_19
SLFN-g3_helicase
nSTAND3
nSTAND_NTPase5
T2SSE
AAA_30
AAA_24
Flavi_DEAD
NB-ARC
AAA_16
Microtub_bd
ATPase
SRP54
Myosin_head
ABC_tran
Motif
Other DBs
NCBI-GeneID:
112203272
NCBI-ProteinID:
XP_040361674
LinkDB
All DBs
Position
5:16162747..16167073
Genome browser
AA seq
1146 aa
AA seq
DB search
MAILYTRRCKTEKISFYLETNKNPYLFADGKSHDRVERAIWAFVKSSVLLSISDQPTDSQ
LQFSDQFQTQSGGGGGLHVRGTERVVFRPPEKKKLGFDGGVRRYKGRYDDGDGGERRDYR
DGGGRSRSRVRGRYEEDGYGGDYGRKKSRYEGSKRGAQSVASAWDCISYSPVQIRASGQP
VKSSGSGRGGSSHQLDSTLGEEGDSVRYEIDESMRLEMEYDCDRAWYDREEGSTAVDTSH
SSSLFYGDDAFCRKKETELAKRLVRRDGTKMSLAQSKRLSQHSADNAQWEDRQLLRSGAV
RGTEVQSEIDDEDENKVMLLVHDTRPPFLDGRVVFTEQAEPVMPVKDPTSDMAIISRKGS
ALVREIHQKQSSNKSRQRFWELAGSKLGDILGVEKTAEHIDADTAVVGKHGEVDFKEDAK
FAQHMKNGEAVSEFTKSKTISEQRQYLPIYSVRDELLQKIRENQVIIVVGETGSGKTTQL
TQYLHEDGYTVNGIVGCTQPRRVAAMSVAKRVSEEMETELGEKVGYAIRFEDVTGPKTVI
KYMTDGVLMCETLRDSDLDKYRVVVMDEAHERSLYTDVLFGILKKVVAQRRDFKLIVTSA
TLNAQKFADFFGGAPIFPIPGRTFPVHKKYLDTPCEDYVEAAVTQAMKIHIGSPPGDILI
FMTGQEEIEAACYSLAERMEQLISSSKKGMSKLLILPMYSQLPADLQAKIFQRSKDGARK
CIIATNIAETSLTVDGIFYVIDTGYGKMKVYNPRMGMDALQVFPSSRAAADQRAGRAGRT
GPGTCYRLYTESAYLNEMLASPVPEIQRTNLGYVVLLLKSLKVDNLLDFDFMDPPPQENI
LNSMYQLWVLGALDNVGGLTALGWRMVEFPLDPPLAKMLLMGEELGCVDEILTIVSMLSV
PSVFFRPKDRAEESDAAREKFSVPESDHLTFYNVYQQWKQHQYRGDWCSDHFLHVKGLQK
AREVRSQLLEILKTLKIPLTSCWPDTDVVRKAICSAYFQNAAKFKGVGEYVNCRTGMPCH
LHPSSALYGMGCTPEYVVYHEQILTTKEYMQCVTAVEPQWLADWGPMFFSVKESDTSVLQ
NKKRRQEEKTAMEEEMDNLRKAQARAEAESKQREREKRYKQQQQQVSLAGLHQGSSTYLR
PKKLGL
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atggccatattgtatactagaagatgcaaaactgaaaaaattagcttctatcttgaaaca
aataaaaatccctatttattcgcagacggcaagagtcatgatcgcgttgaacgagcgatt
tgggcgttcgtaaaatcttcagttctcctatcaatttcagaccaacccaccgattctcag
cttcagttttccgatcaattccagacccagagcggaggaggtggaggattacatgttcgt
gggacggagagagttgttttcaggccgccggagaagaagaaattagggtttgatggaggt
gtcaggagatataagggtaggtatgatgatggggatggtggtgaaagaagagattacaga
gatggtggtggtcgtagtaggagtagggtgagaggaagatatgaggaagatggatatggt
ggagattatggaagaaagaagagtagatatgaaggttcgaagaggggagctcaatctgtt
gcttctgcctgggattgtatctcttactctccggttcagatacgggcttctggacagcca
gtcaagtcttcgggctcgggacgtggtgggagttctcatcagcttgatagtacgctagga
gaagagggtgattcggttagatatgagattgatgagagcatgcgtttagagatggaatat
gattgtgaccgtgcgtggtatgatagagaagaaggaagcacagcggttgatacgagtcat
agttcgtctttgttttatggggatgatgctttttgtcgaaagaaggaaacggagttggcg
aagagactggttcggagagatggaactaagatgagccttgctcagagcaaaaggttgtct
cagcacagtgcggataatgctcagtgggaggatcgtcagctactgcgatctggtgctgtt
agaggtactgaggtgcagagtgagattgatgatgaagatgagaacaaagttatgcttctt
gttcatgatacaaggcctcctttcctggatgggagagttgtttttaccgagcaagcggag
ccagttatgccagtaaaggatcccacgtctgatatggccataatttcacgcaaagggtct
gctctagttagggaaatccatcaaaagcaaagttcgaataaatcacgtcaacgtttttgg
gagcttgcaggttccaaacttggtgatattcttggtgttgagaaaacagcagagcatatt
gatgcagatactgctgtagtaggtaaacacggtgaagttgatttcaaagaagatgcaaag
tttgctcagcatatgaagaatggggaggctgtgagtgaattcacaaagtcaaaaaccatt
tccgaacaacgccagtatctgcctatatattctgtgagggatgagttactgcagaaaatt
cgagaaaatcaggttattatagttgttggagaaactggttctggaaagacaactcaactg
acacaatatctgcatgaagatggttacactgtgaacggtatagtcggttgcacccagcca
agacgtgtggcagccatgagtgttgctaaaagagttagtgaagagatggagactgagctt
ggtgagaaagttggctatgctattcgttttgaggatgtgacggggccaaaaactgtaata
aagtacatgactgatggagtacttatgtgtgaaacacttagagattctgaccttgacaag
taccgtgtagttgtaatggatgaagcccatgagaggtcactatatacagatgtgctgttt
gggatcttgaaaaaagtcgtcgcccagcgtcgtgattttaagctcattgtgacatctgct
actcttaatgctcagaaatttgcagatttctttggaggtgcacctatttttcccattcct
ggaagaacatttcctgtacataagaagtacttggataccccatgtgaagattatgttgaa
gctgcagtgacacaggccatgaaaattcacattggcagccctccaggtgatatcctcatc
ttcatgactggccaagaggagattgaagcagcctgttattctcttgcagagcgaatggaa
caacttatctcctcctcaaagaaagggatgtcaaaactcttgatactccctatgtattca
cagctgccagctgacttgcaagcaaagatattccaaaggtctaaagatggggctcgtaaa
tgcattatagcaacaaatattgctgagacatctttgaccgtagatggtatattttatgtc
attgacactggctatggtaaaatgaaagtttacaaccctaggatgggtatggatgctctt
caagtatttcctagtagtcgtgctgctgctgaccaacgtgctgggcgtgctggtagaact
gggcctggaacatgttatcggctgtacacagagagtgcctacctaaatgaaatgcttgcc
agtcctgtaccagagatccagaggacgaaccttggctacgtggtcttgttgctcaagtct
ctgaaggttgataacttgcttgattttgatttcatggacccacctccccaggaaaatatt
ctcaattctatgtaccagctgtgggtcttgggagctctcgacaatgtgggaggtttgact
gccttaggctggagaatggtggagttcccattggaccctccacttgctaagatgttgttg
atgggtgaagagctaggatgcgtagatgaaattttgacaattgtatccatgctttcagtg
ccatcagtattctttaggcccaaagatagggcagaggagagcgatgctgctcgggaaaaa
ttttcagtcccggagtccgatcacctgacattctataatgtttatcaacagtggaaacaa
catcagtatcggggggactggtgcagtgaccattttttgcatgttaaggggttacaaaag
gctagagaggttaggtcccagctgctagagattctgaagacgttgaaaattccactgaca
tcttgttggcctgatactgacgttgtgagaaaagctatttgctctgcatactttcaaaat
gctgcaaagtttaagggtgtgggggagtatgttaattgccggactgggatgccatgccat
ttacacccgagtagtgctctttatggtatgggctgcacccctgagtatgtggtttatcat
gaacagattctgacaacaaaggagtacatgcagtgtgtaacagcagtggagccgcagtgg
ttggctgattggggacccatgttcttttctgtaaaggagtcggatacatcagtgttgcag
aataagaagagacggcaggaagaaaaaacagctatggaggaggaaatggacaatctgaga
aaggctcaagcacgggcagaggcagaaagcaagcagagggagagggaaaagaggtataaa
cagcagcagcagcaagtctcattggcgggtttgcaccagggttcttctacatatctgagg
cccaagaaacttggcttgtaa
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integrated database retrieval system
