KEGG   Rickettsia conorii: RC0182
Entry
RC0182            CDS       T00061                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta prime chain
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
rco  Rickettsia conorii
Pathway
rco03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rco00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RC0182 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rco03021]
    RC0182 (rpoC)
   03400 DNA repair and recombination proteins [BR:rco03400]
    RC0182 (rpoC)
Enzymes [BR:rco01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     RC0182 (rpoC)
Transcription machinery [BR:rco03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     RC0182 (rpoC)
DNA repair and recombination proteins [BR:rco03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      RC0182 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Biotin_lipoyl_2 Peptidase_M23 RnfC_N DUF7749
Other DBs
NCBI-ProteinID: AAL02720
UniProt: Q9RH40
LinkDB
Position
183553..187671
AA seq 1372 aa
MSVVNFYGQLSNTQQFDQIRINIASPDQVRSWSFGEVTKPETINYRTFKPEKDGLFCARI
FGPVKDYECLCGKYKRMKNRGITCEKCGVEVTVSRVRRERMGHIELAAPVAHIWFLKSLP
SRISTLLDMTMRDVEKILYFENYVVVDPGLSILQKGELLTEEELQKAKDKYGEDAFTASI
GAEVIQQMLKELDFSKLKQELYEELQTTSSEVKKKKLVKRLKLVENFLESENKPEWMIMD
VLPVIPPEIRPLVMLDGGRFATSDLNELYRRVINRNNRLKKLIESKAPDIIVRNEKRMLQ
EAVDALFDNGRRGRAAKNANKRPFKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE
LKLHQCGLPKKMALELFKPFIYSKLELYGIATTIKAAKRMVEAEKSEVWDVLEEVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHIPLSIEAQLEA
RVFMMSTNNILSPANGRPIIVPDKDIVLGLYYLTLAFDNEVGAGMMFSDLAEMEHALYNK
FITIHTKIKYRRNQLNAEGKMVPVIIDTTYGRLMVGELLPSNPNIEFKCINKQLTKKDIS
LVIDLVYRHCGQKATVIFADQLMKLGFKYACSSGISFGMDDMVVPESKSTHINETQLEIK
EFEQQYSNGLITYGEKYNKVVDAWSRCTDRVANDMMKEIATPPVNDAPNHQKINAIYMMA
ISGARGSFQQIKQLGGMRGLMTKSNGQIIQTPIISNFKEGLTEFECFNSANGMRKGQIDT
ALKTASSGYLTRKLVDVAQDCIITEKDCGTDKGIEVKSVIEGGEVIVPLAEKILGRTAAI
DIFHPVTNDLILNKGELINEAKLEQIESAGFDRIMIKSVLTCESTTGICSICYGRDLATG
TLVSEGEAIGVIAAQSIGEPGTQLTMRTFHIGGAATKGAEVSSVDASYDAKVKIISRNVV
INSEERKIVMSRNCELLLLDNNGNEKARHKIPYGARLLVDDGDMVIKTQKLAEWDPYTIP
IITEKSGKVLFKDMVEGISIRDVTDEATGIPSKVIIESKQYSRGAELRPRIQLLDAKGEV
ITLSNGLEARYYLPVGAVLSVEDGVQISVGDIIARIPKESTTTKDITGGLPRVAELVEAR
RPKDHAVIAEIDGRVEFGKDYKSKRRIIIHPIDETMSIEYMVPKGKHVVVNEGDFVKKGD
LLIDGNPVLQDILKVMGVEVLANYIVNEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEVTD
SGGTTLLVGEKIDRHEFDEINEKAMKNGLKPAEAQLILQGITKASLQTRSFISAASFQET
TRVLTEAAIAGKVDKLRGLKENVIVGRLVPAGTGYFMDKMRKAAAKLDEENV
NT seq 4119 nt   +upstreamnt  +downstreamnt
atgagcgtagtaaatttttacggacaattaagtaatactcaacaatttgatcagataagg
attaatatagcaagtcccgatcaggtacgttcgtggtctttcggtgaagtaacaaaacct
gaaacaattaactatagaacttttaagcctgagaaagatggtttattttgtgcaagaatt
tttggtccggtaaaagattatgaatgtctctgcggtaaatataagcggatgaaaaaccgt
ggcattacgtgtgagaaatgcggcgttgaagttacggtttctagagtaagacgtgaaaga
atggggcatattgaacttgcagctcccgttgctcatatttggtttttaaagtcgctacct
tcaagaattagtacacttcttgatatgacaatgcgagatgtagaaaagattctttatttt
gaaaattatgtagtagttgacccagggctatcgattttacaaaaaggcgaactcttaaca
gaggaagaattacagaaagcaaaagataagtacggtgaagatgcatttactgcctctata
ggtgcagaagtaatacaacaaatgcttaaagagcttgatttttcaaagttaaagcaagag
ttatacgaggaattacaaaccacttcttcagaagtcaaaaagaaaaaattagtaaagcgt
ttaaaattagtagagaattttttagagtcggaaaacaagccggaatggatgattatggat
gttttaccggttattcctcctgaaattagaccgcttgttatgcttgacggcggaagattt
gctacttcagacttaaatgaactttatagaagagtaattaatagaaataatcgtttaaag
aaattaatagagtcaaaagctcctgatataatagtcagaaacgaaaaaagaatgttacaa
gaagcggtggatgcgttatttgataacggtcgtcgcggtagagcagcgaaaaatgctaat
aagcgtccatttaagtcattaagtgatatgcttaaaggtaagcaggggcgtttccgtcag
aacttgctaggtaagagggttgattactcaggacgttcggttatcgtggtaggacctgag
cttaaacttcaccagtgcggtttacctaaaaaaatggctctggagttatttaagccgttt
atttattctaagcttgagttgtacggcatcgctacaactattaaagccgctaaaagaatg
gtggaagctgaaaaatccgaagtgtgggacgtgcttgaagaggtaattagagagcatccg
gttttactgaatagggctccgacgttacataggcttggtattcaagcatttgaaccgcta
ttaattgaaggtaaagcgatccagcttcatccgcttgtgtgtgctgcgttcaatgcggat
tttgatggtgatcagatggcagtacatatcccgttatcgattgaagcacagcttgaagct
agggtatttatgatgtctacaaataatatcttaagccccgcaaacggtcgtcctatcatt
gtaccggataaagatatagtgcttggtttatattatctaacccttgcatttgataatgaa
gtaggcgcagggatgatgttctcagatttagctgagatggaacatgctttatataataaa
tttataactattcatacaaagataaaatatcgcagaaatcagttaaatgccgaaggtaaa
atggtccctgttatcattgatactacttacggtaggttaatggtcggtgagttattgcct
tctaaccctaatatagaattcaagtgtattaataaacaactaactaaaaaagacatatca
ttagttatagatttagtttatcgtcactgcggtcaaaaagctacggtaatttttgccgat
cagttaatgaaactaggttttaaatatgcttgttcttcaggtatttcttttggaatggac
gatatggtagtaccggaatctaagagtactcatatcaacgaaactcagcttgaaataaaa
gaatttgaacaacaatattcaaacggtttaattacttacggagagaaatataataaagta
gtcgatgcttggtcaagatgtaccgatagagtagcaaacgacatgatgaaagagattgct
acgccgccggttaatgatgctccaaatcatcagaaaataaatgctatatatatgatggct
atttccggagcaagaggttctttccagcaaattaagcagctaggcggtatgcgaggttta
atgaccaaatcaaacggtcaaattatacaaactcctattatctctaactttaaggaagga
ttaactgaatttgagtgttttaattctgctaacggaatgcgtaaagggcaaatagatacg
gctttaaaaacggcaagctcaggttacttaacaagaaaattagtagatgttgcacaagat
tgtattattactgaaaaagattgtggaactgataaaggaattgaagttaagagtgttatt
gaaggtggagaagttatagtacctttagctgaaaagattttaggtcgtactgctgctatt
gatatatttcatccggtaactaatgatctaattctcaataaaggcgagcttattaatgaa
gcaaagttagagcagattgagtcggcaggattcgacagaattatgataaaatccgtatta
acctgtgaaagtactaccggtatatgtagcatatgttacggtagggatcttgctaccggt
acattagtatcggagggtgaagcaatcggggttattgctgctcaatctatcggtgaaccg
ggtacgcagcttacaatgagaactttccatatcggaggagcggcaacaaaaggtgctgag
gtttcttccgtagacgcttcctatgacgcaaaagtgaaaattataagtcgtaacgttgtg
attaattctgaagaacgcaaaattgttatgagccgaaattgtgaattattattgcttgat
aataacggtaatgaaaaggctcgtcataaaattccatacggtgctagattacttgttgat
gacggtgatatggtgattaaaactcaaaaactagcagaatgggatccttatactataccg
attatcacggagaagtcaggtaaagttttattcaaagatatggttgagggtatttctatt
cgtgacgtaactgacgaagctaccggaataccgagtaaagttattattgaatcaaagcaa
tattcacgcggtgcagaattacgtccgcgtatacagcttttagatgctaaaggtgaagtt
atcaccttatcaaacggtttagaagctagatattacttgccggttggagcagttttaagc
gtagaagacggagtacaaatatcggtaggtgatatcattgcacgtataccgaaagaatca
acaactactaaagatattacaggtggtttaccaagagttgccgagcttgtagaagcaaga
cgccctaaagatcatgcagttattgccgaaattgacggtagagtagaattcggtaaagac
tataaatctaaaagacgtattattatacatccgattgatgaaacaatgtctattgagtat
atggtaccaaaaggcaagcatgttgtagttaacgaaggtgactttgttaaaaaaggtgat
ttattgattgacggtaatccggtacttcaagatattttaaaagtaatgggcgtagaggtt
cttgcaaattatattgttaatgaggttcaagccgtttatcgtctacaaggtgtaaagatt
gatgataagcacatagaagttattatccgtcagatgttacaaaaagtagaggttacggat
tcaggaggaactacgttattagtaggtgaaaaaatagatagacatgaatttgatgagata
aatgaaaaagctatgaaaaatggtttaaaacctgctgaagcacaattaatattacaaggt
attactaaagcttctctgcaaactagatcgtttatctccgcggcatcattccaagagact
actagagttttaactgaagcagctattgctggtaaagtagataagttgcgaggactaaaa
gaaaacgtgatagttggacgattagtacctgctggaaccggttactttatggataaaatg
cgtaaagcagctgcaaagcttgatgaagagaatgtataa

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