Ruegeria conchae: K3740_02335
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Entry
K3740_02335 CDS
T08595
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rcon
Ruegeria conchae
Pathway
rcon03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rcon00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K3740_02335 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcon03021
]
K3740_02335 (rpoC)
03400 DNA repair and recombination proteins [BR:
rcon03400
]
K3740_02335 (rpoC)
Enzymes [BR:
rcon01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K3740_02335 (rpoC)
Transcription machinery [BR:
rcon03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K3740_02335 (rpoC)
DNA repair and recombination proteins [BR:
rcon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K3740_02335 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
UWR03564
LinkDB
All DBs
Position
470899..475140
Genome browser
AA seq
1413 aa
AA seq
DB search
MNQEITNNPFNPLTPPKVFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLTYGQMLTEEEYMDAQDAYGMDAFT
ANIGAEAIREMLAQIDLEAEAEQLRADLAEATGELKPKKIIKRLKVVESFLESGNRPEWM
VMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYVTLEREGMPGEGKVFGSIEEVQHAL
DAGEVHLHSKITARITQIDDEGNEVQKRYETTPGRLRLGALLPMNNKAPFELVNRLLRKK
EVQQVIDTVYRYCGQKESVIFCDQIMSMGFKEAFKAGISFGKDDMVIPDDKWGIVDDTRG
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDRVTEAMMSTISDVAKAEDGSDQEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVREIDCGTERAITAEAAVNDGEVVASLAERVLGRV
SADDVLRPGTDEVLVAAGQLIDERMADTIDEAGVASMRIRSPLTCESEEGVCATCYGRDL
ARGTMVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFQEASQEGVVSFENPQ
ILVNAAGESLVMGRNMKLVISDEHGEERASHKLGYGSKLFVKDGTKVSRGDKLFEWDPYT
LPIIAEKAGTAKYVDLVSGIAVRDETDDATGMTQKIVIDWRAAPKGSDLKPEIILVGEDG
EPVRNDAGNPVHYPMSVDAILSVEDGQQIEAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEADGYVRFGRDYKNKRRISIEPADESMETIEYMVPKGKHIPVAEGDFIQ
KGEYLMDGNPAPHDILSIMGVEALADYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
ILDSGDTTLLKGEHVDKQEFDAANEKTISRGGRPAQGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKKDKLVGLKENVIVGRLIPAGTGGATQAVRHIAQSRDNVVIEARRE
EAEAAAALAAPTFDDDMVGDELDVLVETPESRE
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaaatcaccaacaacccgttcaacccgctgacgcccccgaaagtattcgac
gagatcaaggtctcgctggcgtcgcccgagcggatcctgtcttggtcctatggcgagatc
aagaaacccgaaaccatcaactaccggacgttcaagcccgagcgtgacggtctgttctgc
gcgcgtatctttggcccgatcaaagattacgaatgcctgtgcggcaaatataagcggatg
aaatatcgcggcgttgtctgcgagaaatgcggtgtggaagtcaccctgcagaaagtccgc
cgcgaacgtatgggtcacatcgaactggccgcgcctgttgcacacatctggttcctgaag
tcgctgccgtcccgcatcggcctgatgctggacatgacgctgcgcgatctggaacgtgtt
ctgtacttcgaaaactacgtcgtcatcgagcccggtctgactgacctgacctacggccag
atgctgactgaagaagagtacatggacgctcaggatgcctacggcatggacgcgttcacc
gcgaatatcggtgccgaagccatccgtgagatgctggcccagatcgatctggaagccgaa
gccgagcagctgcgtgctgatctggccgaagcaaccggcgaactgaagcccaagaagatc
atcaagcgactgaaggttgttgaatccttcctcgagtcgggcaaccggcctgagtggatg
gtgatgaccgtgatcccggtcattccgccggaactgcgtccgctggttccgctggatggt
ggccgtttcgcgacctcggatctgaacgatctgtatcgccgcgtcatcaaccggaacaac
cgtctgaagcgtctgattgagctgcgcgcacctgatatcatcgtccgtaacgaaaagcgg
atgctgcaggaatccgtggatgctctgttcgacaatggccgtcgtggccgcgtgatcacc
ggcgccaacaagcgtccgctgaaatcgctgtcggacatgctgaaaggtaagcagggtcgc
ttccgtcagaaccttctgggtaagcgcgtcgacttctcgggccgttcggtcattgtgacc
ggtccggagctgaagctgcaccagtgtggtctgcccaagaagatggctctggaactgttc
aagccgttcatctattcgcgccttgaagccaagggtctgtcttcgactgttaagcaggcg
aagaaactggtcgagaaagagcgtcccgaagtgtgggatatcctcgacgaggtgatccgc
gaacaccctgtcatgctgaaccgcgcgccgacgttgcaccgtcttggcattcaggcgttc
gagcccgttctgatcgaaggtaaagccatccagctgcacccgctggtctgctcggccttt
aacgccgacttcgacggtgaccagatggccgttcacgtcccgctgagccttgaggcccag
ctggaagcccgtgttctgatgatgtcgacgaacaacgttctgtcgcctgcaaacggcgca
ccgatcatcgttccgtcgcaggatatgattctgggtctgtactacgtgaccctggaacgc
gaaggcatgccgggcgaaggcaaggtctttgggtcgatcgaagaagttcagcacgcgctg
gacgcgggtgaggtgcatctgcactcgaaaatcaccgcgcggatcacgcagatcgacgac
gaaggcaacgaagttcagaagcgctacgaaaccactccgggccggctgcgtctgggtgcg
ttgctgccgatgaacaacaaggcaccgttcgagctggtcaaccgcctgctgcggaagaaa
gaagtgcagcaggtgatcgacaccgtctaccgttactgcggtcagaaagagtcggtcatc
ttctgtgatcagatcatgtcgatgggcttcaaagaagctttcaaagcgggcatctcgttc
ggtaaggacgacatggttattcccgatgacaagtggggcatcgttgatgacactcgcggt
caggtgaaggactttgaacagcagtacatggacggcctgatcactcagggcgaaaagtac
aacaaagttgtcgatgcctggtcgaagtgtaacgaccgcgtcaccgaggcgatgatgagc
acgatctcggatgtcgccaaggccgaagacgggtcggatcaagagccgaactcggtctac
atgatggcccactccggtgcgcgtggctcggtcactcagatgaaacagctgggcggtatg
cgcggcctgatggccaagccgaacggtgacatcatcgagacgccgatcatctcgaacttt
aaggaaggtctgaccgttctcgagtacttcaactcgacccacggggcccgtaagggtctg
tcggataccgctctgaagacggcgaactcgggttacctgacccgtcgtctggtagacgtg
gcacaagactgtatcgttcgtgagatcgattgtggcaccgagcgtgcgatcactgccgaa
gcagccgtgaacgatggtgaggttgtcgcctcgctggccgaacgtgtgctgggccgtgtc
tctgccgatgacgttctgcgtccgggtacggacgaggttctggtcgctgcaggtcagttg
atcgacgaacgcatggcggacaccattgacgaagccggtgttgcttcaatgcgtatccgc
tcgcctctgacctgtgagtccgaggaaggcgtctgcgccacctgctacggtcgtgacctt
gcacgcggtaccatggtgaacacaggtgaggctgtcggcatcatcgccgcgcagtccatc
ggtgagcccggtacacagcttaccatgcggaccttccacatcggtggtgttgcgcaaggt
ggtcagcagtcgttccaggaagccagccaggaaggtgttgtttccttcgagaacccgcag
attctggtcaatgccgcaggcgaaagcctcgttatgggccggaacatgaagctggtgatc
agcgacgaacacggcgaagagcgtgccagccacaagcttggctacggctctaagctgttc
gtcaaggacggcaccaaggtgtcccgtggcgacaagctgttcgaatgggatccctacacc
ctgccgatcatcgccgagaaagccggtactgcgaagtacgttgaccttgtttcgggcatc
gctgtccgcgatgagaccgacgatgcaactggtatgacccagaagatcgtgatcgattgg
cgcgctgcccccaaaggtagcgacctcaagcccgagatcattctggtcggcgaagatggc
gagccggtccgcaacgatgcgggcaacccggttcactatccgatgtcggtggatgcgatc
ctgtcggtcgaagatggtcagcagatcgaagccggtgacgttgtcgcgcgtatcccgcgt
gaaggtgctaagaccaaggacatcaccggtggtctgccgcgtgtggccgaactgttcgaa
gcccgccgtccgaaagatcacgcgatcatcgcagaagccgatggttacgtgcgctttggc
cgcgactacaagaacaagcgccgcatcagcatcgaaccggctgacgagtcgatggagacc
atcgagtacatggtgcccaagggcaagcacatcccggttgccgaaggggacttcatccag
aagggtgaatacctgatggatggtaacccggctcctcatgacatcctgtccattatgggc
gtcgaagcgctggcggattacatgatcgacgaagtgcaggacgtttatcgtctgcagggc
gtgaagatcaacgacaagcacatcgaagtcatcgtgcgccagatgctgcagaagtgggag
atcctggattcaggcgacaccaccctgctaaaaggcgagcatgtcgacaagcaggagttc
gacgcagccaacgagaaaaccatctcgcgcggcggtcgtccggcgcagggcgagccgatc
ctcttggggatcaccaaagcctcgctgcagacgcgttcgttcatctcggcggcgtcgttc
caggaaaccacccgcgtgctgaccgaagcttcggttcaaggcaagaaagacaagctggtt
ggcctgaaagagaacgtcatcgttggtcgcctgatccccgccggtaccggtggggccact
caggccgtgcgccacatcgcgcagtcgcgtgacaacgtggttatcgaagcccgccgggaa
gaggccgaagcggccgctgctttggccgctccgacattcgacgacgatatggtcggtgat
gagctggacgttctggtggaaacaccggaaagccgcgaataa
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