Ruegeria conchae: K3740_07960
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Entry
K3740_07960 CDS
T08595
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rcon
Ruegeria conchae
Pathway
rcon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K3740_07960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcon03019
]
K3740_07960
03009 Ribosome biogenesis [BR:
rcon03009
]
K3740_07960
Enzymes [BR:
rcon01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
K3740_07960
Messenger RNA biogenesis [BR:
rcon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K3740_07960
Ribosome biogenesis [BR:
rcon03009
]
Prokaryotic type
rRNA processing factors
K3740_07960
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
UWR04603
LinkDB
All DBs
Position
1608220..1611012
Genome browser
AA seq
930 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAMRARDEAEEFKPKKRRSRSRS
KAADVKTDDPVETLEVSSEPTGMETIDLGDETEETDLSVPEGTSPMETVAETPVEEPADE
AVDQPEETAIEQVAEQEAPSTEGTSEEQSEAVAEDVTEGASEETVEDAAQEEAVEGSVDT
ETSEEADQDVDESEEAKATDAASKDDSIESVADEDDSEDIRPPRKPRPRRYKIQEVIKVR
QVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKDIAS
EIDVPTGAGLIVRTAGAKRTKSEIKRDYEYLQRMWEQIRELTLQSIAPAKIYEEGDLIKR
SIRDLYNRDIDEVLVEGEGGYRIAKDFMKMIMPSHAKNVKRYEDALPLFARYQVESYLAG
MFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLR
DLAGLIVIDFIDMDERKNNSAVEKRLKDKLKTDRARIQVGRISGFGLLEMSRQRLRPGML
EATTQPCPSCHGTGLIRSDDNMALSILRQIEEEGTRRRSREVLVRCPVSIANFLMNQKRE
HIAQIEARYGLSVRIEGDVHLVSPDFSMEKFKTASRVVPEATAPVVSVDASLMDLVDATE
EEESEEEVTVQNEEEAKPKRKRRRRRRKKNAGGSEASDSDTDETEAENNAEAAERAETVE
TEQAEAEPVNEEAAEKPAKPKKRRAPRRRKKDADTDTDANETQPATDDTAAEQANEPVAS
TVEVSEVEPEQTPEAKNPGEAPEPEVAEAQSVEASEQAEAVAVEAEEQPIEIEPEVVETE
TPEPVLEVVTEEPEPAPAKPKRRGWWSLGQ
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atggctaagaaaatgcttatcgatgccacccacgcggaggaaacccgcgttgtggtggtc
gatggaaacaaggttgaggaatttgactttgaatccgaaaacaaacgccagcttgctggc
aacatctatcttgcaaaagtaacgagggttgagccgtcgcttcaggcggcttttgtggat
tatggcgggaaccggcacgggtttctggcgttttctgagattcatccggattattatcaa
atcccggtcgccgaccgcgaagcgctgatggaagaagagcgcgcttatgccgaagccatg
agggcacgggatgaggcggaggaattcaaacccaaaaaacgtcgctcgcgctcacgtagc
aaggcggcagatgtgaaaacggatgacccggtcgaaaccctcgaagtttcgtccgaaccc
accggtatggaaaccatcgatctgggagatgaaactgaggagaccgatctatcggttccc
gaggggacttcgcccatggaaacggttgctgagacccctgtagaggaaccggccgacgaa
gcagttgaccagccggaagagaccgcgattgagcaggttgccgagcaagaggcacccagc
acggaaggtacctctgaggagcaatccgaagctgttgcagaggatgtcacagaaggagca
tccgaagagactgtcgaggatgcggctcaagaagaagccgttgaaggctctgttgacacg
gagacctcggaggaggctgatcaagatgtggacgagagcgaggaggccaaggcgacggac
gctgcctcgaaagacgactcgatcgaatccgtagcggatgaggatgatagcgaggacatc
cgtcctccgcgtaaaccgcgcccacgccggtacaagattcaagaagtcatcaaggtgcgc
caggttttgctggtgcaggtggtcaaggaagaacgtggcaacaagggtgcggcgctgacc
acatatctttcgttggccggtcgttattgcgtgctgatgccaaacacggcgcgcggtgga
gggatcagccgcaagatcaccaacgcggccgaccggaaaaaattgaaggacatcgcctcg
gagatcgacgtaccaacaggtgcgggtctgatcgtgcgcacggcaggggccaagcgcacc
aagtcagagatcaagcgcgactatgaatacctgcaacgtatgtgggaacagatccgcgaa
ctgacgctgcaatccattgcaccagcgaagatttacgaagaaggcgacctgatcaagcgg
tcgatccgcgatctttataatcgtgatatcgatgaagttctggttgaaggtgagggcggg
tatcgcatcgccaaagacttcatgaagatgatcatgccgtcccatgccaagaacgtgaaa
cggtatgaggatgcgctgccactgttcgcgcgttatcaggtggagagctatctggcgggg
atgttcaacccgacggttcagttgaaatcgggtggctacatcgttatcggcgtgaccgaa
gccctggtcgcaatcgacgtgaactcgggtcgggcgaccaaagaaggctcgatcgaggaa
actgcactgaaaacgaacctagaggccgcagaagaggtggctcgccaattgcgtctgcgc
gatcttgcgggcctgatcgtcatcgacttcattgatatggacgagcgtaagaacaactcg
gctgttgaaaaacgcttgaaggacaagctgaaaacagatcgcgcccgtattcaggtgggc
cggatttcgggctttggtctgcttgagatgagccgccaacgtctgcggcccggtatgctt
gaagcgacgacacagccgtgcccatcttgccatggcaccggtctgatccgatcggatgac
aatatggcgctgtcgatcttgcgccagatcgaagaagaaggcactcgccgccgttcgcgt
gaggttttggtgaggtgtccggtcagcatcgccaacttcctgatgaaccagaaacgtgaa
catatcgctcagatcgaggcgcggtatggtttgtcggtgcgcatcgaaggggatgtgcat
ctggttagccctgatttctcgatggagaagttcaaaaccgccagccgcgttgttcccgag
gctactgccccggtggtatcggtggatgcgtccctgatggatttggtcgacgccaccgaa
gaggaagaaagcgaagaagaagtcacagtacagaacgaggaagaggccaagccgaagcgc
aagcgtcgtcggcgtcggcgcaaaaagaacgcgggcggttcggaggcgtctgatagtgat
actgacgaaactgaggccgagaataacgctgaggcggctgaacgggctgaaactgttgag
accgagcaggccgaggctgaaccggttaatgaggaagcggctgagaaaccagccaagccc
aagaagcgtcgggcgccgcgtcgccggaaaaaggatgcagatactgacaccgatgccaac
gaaactcagcctgccacagatgacacggcggctgaacaggcgaacgaaccagttgcttcc
acagttgaggtttccgaggtcgaaccagagcaaaccccagaagcaaagaaccccggggaa
gcacccgaacctgaggttgccgaggctcagtcagtggaagcttctgaacaggccgaagca
gtggccgtagaggccgaggaacagcctatagagattgaacctgaagttgttgagactgag
accccagagcctgtcctggaggtggtgacggaagaacctgaacctgcgccagccaagcca
aagcggcgcgggtggtggtcactcgggcaataa
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