Ruegeria conchae: K3740_12555
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Entry
K3740_12555 CDS
T08595
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rcon
Ruegeria conchae
Pathway
rcon03030
DNA replication
rcon03430
Mismatch repair
rcon03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rcon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K3740_12555 (dnaE)
03430 Mismatch repair
K3740_12555 (dnaE)
03440 Homologous recombination
K3740_12555 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rcon03032
]
K3740_12555 (dnaE)
03400 DNA repair and recombination proteins [BR:
rcon03400
]
K3740_12555 (dnaE)
Enzymes [BR:
rcon01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
K3740_12555 (dnaE)
DNA replication proteins [BR:
rcon03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
K3740_12555 (dnaE)
DNA repair and recombination proteins [BR:
rcon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
K3740_12555 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
Motif
Other DBs
NCBI-ProteinID:
UWR01892
LinkDB
All DBs
Position
complement(2515401..2518901)
Genome browser
AA seq
1166 aa
AA seq
DB search
MSSHPRFIHLRVHTEYSLLEGAVRLKKLPGLCEKMEMPAVAVTDTNSMFSALEFAVTASG
AGIQPIMGCQVDLTYVQAQPGEKPKAPAPLVLLAQSEVGYENLMKLSSCLYVDKGGQLPQ
VTLDELSKHSDGLICLTGGPDGPVGMLLQQGQRPAAEALMDRLAGMFPGRLYVELQRHPD
EDGQPEAERLTERGHVEMAYAKNLPLVATNDVYFPTTDMYEAHDALICIAEGAYVDQQEG
RRRLTAQHYFKSQQEMVTLFADLPEAIENTIEIAKRCAFMAYRRDPILPKFADDEVAELR
RIANEGLQKRLAVIPHAVTPEQYQERLDFELDIIEGMGFPGYFLIVADFIQWAKDEDIPV
GPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRYV
QQKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPVSIEKALK
DEPRLREEARSEEVVDRLLTYGQQVEGLLRNASTHAAGVVIGDRPLDALVPIYQDPRSDM
PATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFKSGRDLHIAADGTELYEPAEGAE
NQINAIPLDDEVTYKLYSAAKTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPM
ENIPTYCEVKNGLRKIESVHPLIDHILEETQGIIVYQEQVMQIAQVMAGYSLGGADLLRR
AMGKKIKEAMDAERPKFEKGAGENGVDAKKASEVFDLLEKFANYGFNKSHAAAYAVVSYQ
TGWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLELPYVPPCVNRSQATFDVVEGH
LVYALGALKNVGVEAMNLVVDGRADKPFVNLFDFARRVDLKKVGKRPLEMLARAGAFDEL
DKNRRRVFESLDSLVQYSAAIHDQKISNQVSLFGEAGDDLPEPRLSPAPDWLPAERLSEE
FKAIGFYLSGHPLDDYMPALRRKQVLTMDQVTEKARSGPFIAKMAGVVAGRQERKSARGN
RFAFAQLSDPTGAFEVTLFSETLEKSREFLETGAQVVLTAEATMEADQLKLLGRSVGPVD
VVVAEAGATGLRVFVEDSKVLPSMAKVLEDADSNAKRAAKGPVYVCLLDPGLPGEVELDL
GRNYAINPQIKGALKSLEGISEIEEV
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccatccccgattcattcacctccgcgttcacaccgaatattctctgctggaa
ggtgccgtgcggctgaaaaagctaccgggtctttgcgagaagatggaaatgcccgccgtt
gcggtgaccgacaccaattccatgttctcggcgctggagttcgccgtgaccgccagcggg
gcgggcattcagccgattatgggctgtcaagttgatctgacctacgtacaagcacagccg
ggtgagaagccgaaggcgcctgcgcccttggttcttctggcacaatccgaggtcggttat
gaaaacctgatgaagctcagctcgtgcctttacgtggacaagggcgggcagttgccgcag
gttacattagacgaattgtcaaagcactcggacggcttgatctgcttgacgggtgggccg
gatgggccggttgggatgttgttgcaacagggccagcgcccagcggccgaggctctgatg
gatcgactagcagggatgttcccgggcaggctttatgtcgaacttcagcgtcacccagat
gaagatggtcagcccgaggccgaacgcctgaccgaacgcggtcatgtcgagatggcttat
gccaagaacctgccgctggtcgccacaaacgatgtctatttcccgaccacggacatgtac
gaggcgcatgacgcgctgatctgcatcgccgaaggtgcctatgttgaccagcaggaaggc
cgccgccgcctgaccgcacagcactatttcaagtcgcagcaagagatggtgaccttgttt
gccgatctgcccgaggcgattgaaaacacgattgagatcgccaagcgctgcgcgtttatg
gcctatcgccgcgatccgatcctgccaaaatttgctgatgacgaagtggcagaattgcgc
cgcattgcgaatgagggcttgcagaagcgtctggcggtgatcccgcatgcggtgacaccg
gaacaatatcaagagcgtctggatttcgaactcgacatcatcgaaggaatgggctttccg
ggttatttcctgatcgttgctgactttatccagtgggcaaaggatgaagacatcccggtt
ggcccgggacgtggctcgggtgcgggctcgctggtggcctatgcgctgacgattaccgac
cttgacccactacgttattcgctgctgtttgaacggttcctgaaccccgagcgggtctcg
atgccagactttgatatcgatttctgcatggaccgccgcgaagaggtgatccgctatgtg
cagcagaaatacgggcgcgacaaggtaggtcagattatcaccttcggtgcactcctgtcg
aaagctgccgtgcgtgatatcgggcgggtcctgcaaatgccctacgggcaggtggatcga
ctttccaagatgatcccggtcgaaggcgttaaacccgtttccattgaaaaggcactgaag
gatgaaccgcgcctacgggaagaggcacgcagcgaagaagttgtcgaccgccttttaact
tacggccagcaggtcgaaggattgctgcgcaacgcctcaactcacgcggctggtgtggtg
attggcgaccgtccgttggatgcactggtgccgatctatcaggatccgcgctcggacatg
cccgcgacccagttcaacatgaaatgggtagaacaggccgggttagtaaaattcgacttt
ctgggcctgaagactctgacggtgatccaaaatgcgatggatctgatattcaaatccggg
cgtgatttgcacatcgctgccgatggcacggaactctatgaacccgccgaaggggccgag
aaccagatcaatgccatcccgctggatgacgaggtgacatacaaactctactcggcggcc
aagaccgtggcggtgttccaggtggaatcctcgggcatgatggatgcgctcaagcgcatg
aaacccacctgtattgaggacatcgtggcccttgtggcgctctatcgtcccggcccgatg
gagaacatcccgacctattgcgaggtcaagaacgggctgcggaagatcgaatccgtgcat
cctctgatcgaccatatccttgaggaaacccaaggcatcatcgtctatcaggaacaggtg
atgcagatcgcgcaggtcatggcagggtacagcctaggcggtgccgacctgctgcgccgc
gctatgggcaagaagattaaagaggcgatggatgccgaacgccccaaattcgaaaagggc
gcaggtgagaatggcgtggatgccaagaaggcctccgaggtcttcgacctgctggaaaag
ttcgccaactacggtttcaacaaatcccacgctgccgcctatgcggtcgtcagctaccag
accggttggctgaaggccaaccatccggtcgagttcatggcaggcgtcatgaactgcgat
atccatctgaccgacaagctggctgtctattttgaagaggtccgaaaggggctggaactg
ccctatgtgccgccgtgcgtgaaccgatctcaggcgacgtttgacgtggtggaagggcat
ctggtctatgcgctgggtgcgctgaaaaacgtgggtgttgaggcgatgaacctcgtcgtc
gatgggcgcgcggacaagccatttgtgaacctcttcgattttgctcgccgtgttgatctg
aaaaaagtcggcaagcgcccgctagagatgctggcgcgtgccggtgcgttcgatgaactc
gacaagaaccgccgtcgcgtgtttgaaagcctggactcgctggtgcaatattcagccgcc
atccacgatcagaaaatctcaaaccaggtgtcgctgtttggtgaggcaggagatgacctg
cccgaacctcggctgtcacccgcaccagactggctgcccgctgagagattgagcgaagaa
ttcaaggccatcgggttctatctgtccggccatccgctggatgattatatgcctgcattg
aggcgcaagcaggtgctgacaatggatcaggtgaccgaaaaggcgcgctctggtccgttc
atagcaaagatggccggtgtcgtcgccggacggcaagagcgaaagtcggcgcgtggcaat
cggttcgcatttgctcagctctctgaccccaccggagcattcgaggtcacgctattctca
gaaacactagagaaatcccgagagtttctggaaaccggcgcgcaggtcgtattaaccgcc
gaagccacgatggaggcggatcagctcaagctgttgggtcggtcagttggtccggtcgac
gtggtggtcgccgaggctggggccacaggcctgcgtgtatttgtggaagattcaaaggtt
ttgccaagcatggcgaaagtgttggaagacgcagatagcaacgccaaaagggctgccaaa
ggcccagtttacgtctgcctgcttgatcccggtttgccgggtgaggtcgaattggatctg
ggacgaaactatgcgatcaatccccaaatcaaaggtgccctcaaatcgcttgagggaatc
tcggagatcgaggaagtttga
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