Rhodobacter capsulatus: RCAP_rcc00037
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Entry
RCAP_rcc00037 CDS
T01213
Name
(GenBank) UvrD/REP helicase family protein
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
rcp
Rhodobacter capsulatus
Brite
KEGG Orthology (KO) [BR:
rcp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcp03400
]
RCAP_rcc00037
Enzymes [BR:
rcp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RCAP_rcc00037
DNA repair and recombination proteins [BR:
rcp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
RCAP_rcc00037
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
PDDEXK_1
UvrD_C_2
UvrD_C
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
ADE83802
UniProt:
D5AKG0
LinkDB
All DBs
Position
complement(42583..45948)
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AA seq
1121 aa
AA seq
DB search
MTQRNPASERQVQAADPAASTWLAANAGSGKTKVLTDRVARLLLAGTEPQKVLCLTYTKA
AAAEMQNRLLKRLGDWAMLPDADLRAQLAALGECGPLDAESLARARRLFAQAIETPGGLK
IQTIHAFCGALLRRFPLEAGVSHGFAEIDDRTAARMREEVLEEIASGPDRPVLDLFLQAF
TGADLTGMIAEISHDRDAFSHRLTEADLRKVLGLAPDLRPETLPDAVFLPGTDRVIAAAI
PLLKTQSATMKTLAAQLSLLDLLAPGPADLARLADLCLVKDGSRVSSRFLTKGAIEAFGP
DLAEDVLDLAERVRWAREQENALATLNRTLALHDFARVLLPALALKKAQGGWLDFDDLIE
RAGALLSDPSVAQWVLFRLDGGIDHILVDEAQDTSPGQWRVIERLADEFTSGDGARDSRR
TIFVVGDRKQSIYSFQGADLTHFEAMKSLFSAKFAAISRPLQDAALLHSFRSSLAILRLV
DLTFRGDPALALGGAPEHLAFHDKLPGRVDLWPVVPKPDKTEPEEWDDPVDRPGADTAPV
VLARAIAAEIRAMVDAGVQLPGREGPRPVTAGDFLILVQRRSGLFYEIILACKAQGLEVA
GADRLKLGGELAVKDIVSVLAFLATPEDDLSLAEALRSPLFGWSEDQLFRLAQPRKGYLW
AALREAGDEATLTVLRDLLDRSDFLRPYDLIERLLTRHEGRKRLVARLGAEAEEGIDALI
AQALAYEQTEVPSLTGFLVWLGADEIEIKRQSDSAGTALRVMTVHGSKGVEAPIVILPDT
AKLRNSQRGELLLAEGIPFWKSAAATLPPVLAQAQAEVLERQRHERLRLLYVAMTRAEKW
LIVATAGDEEEGAESWHALVSGGMKSAGTETVSALSEPLQALGPVLRFSHGDWPENGTPV
GAAEVVRIALPNWARERVLPVHKTAKALSASDLGGPKALPGETAELSTEAAMLRGRRLHL
LLEHLPQAPSETWPDLAQSLLGFGNDRAFPDEIEALLTRALQVLTAVEKAGFLGPDTLAE
VELTAELPELGGQRLHGIIDRLQIGPDRIRVLDYKSNAIVPNTAAEVPLGLVRQMAAYRA
ALRQIYPGRAVECFLLWTETGAVMPLGDTLLEEALLSATAS
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgacccagcgcaatcccgccagcgaacggcaggttcaggccgccgatcctgcggcctcg
acctggctggccgccaatgccggatcgggcaagaccaaggtgctgaccgaccgcgtcgca
cggctgcttttggccggaacagagccgcaaaaagtgctgtgcctgacctataccaaggcc
gccgcggccgagatgcaaaaccggcttctgaagcgtctgggcgattgggcgatgctgccc
gatgccgatctgcgggcgcagcttgcggctttgggcgagtgcgggccgctcgatgcggaa
agccttgcccgggcacggcggcttttcgcccaggcgatcgagaccccgggcgggttgaag
atccagaccatccatgccttttgcggcgccttgttgcgccggtttccgctggaagccgga
gtttcgcacggatttgccgaaatcgacgaccgcaccgccgcacggatgcgcgaggaggtt
ctggaagagatcgcctcgggtccggaccggccggttctggacctcttcctgcaggccttc
accggggccgatctgaccgggatgatcgccgaaatcagccatgacagagacgctttttcg
catcgcctgaccgaggcggatctgcgcaaggtgctggggttggccccggatctgcgtcct
gaaaccctgcccgatgcggtctttctgcccggcaccgatcgggtgattgccgcggcgatt
ccgctgttgaagacgcaatcggcgacgatgaaaaccttggcggcgcagctttcgctgctt
gatctgctggcccccgggcccgcggatctggcgcgtcttgccgatctttgtctcgtcaag
gacggcagccgcgtctcctccaggtttctgaccaaaggcgccatcgaggctttcggtccc
gatcttgccgaggatgtccttgacctggccgagcgcgtgcgctgggcgcgggagcaggaa
aacgcccttgcgacgctgaaccggacccttgcgctgcatgatttcgcccgggtgctgctg
cccgctctggccctgaagaaggcgcaggggggctggctggatttcgacgacctgatcgag
cgggccggggcgcttctgtccgacccttcggttgcgcaatgggtgctgttccggctggat
ggcggcatcgatcacattctggtcgatgaggcgcaggacacctcgcccgggcagtggcgg
gtgatcgagcggctggccgatgaattcacctcgggcgacggggcccgggacagccgtcgc
acgatctttgtcgtcggcgaccggaagcagtcgatctattcctttcagggcgccgacctg
acccatttcgaggcgatgaagagcctgttttccgcaaaattcgcggcgatttcgcgcccg
cttcaggatgccgccctgctgcattccttccgctcgtcgctggcgatcctgcgtctggtc
gatctgaccttccgcggcgatcccgcgctggcgctgggcggtgccccggaacatcttgcc
tttcacgacaaacttccgggccgagtcgatctttggcccgtggtgccgaaacccgacaag
accgagccggaggagtgggacgaccccgtcgatcggcccggcgccgataccgcgcccgtc
gtgctggctcgggcgattgccgccgagatccgcgcgatggtggatgccggggtgcagctt
ccggggcgcgaggggccgcggccggtcactgccggggatttcctgatcctcgtgcaacgc
cggtccgggctgttttacgagatcattctggcctgcaaggcgcaggggctggaggttgcg
ggggcggatcggctcaagcttggcggcgagcttgcggtcaaggatatcgtctctgttctg
gcctttctggccacgcccgaggatgatctgtcgctggccgaggcgctgcgatcgccactg
tttggctggagcgaggaccagcttttccggctggcgcagccgcgcaagggctatctttgg
gccgcgctgcgcgaggcgggcgacgaggcgacgctgaccgttctgcgcgatcttctggat
cggtcggatttcctgcggccctatgatctgatcgagcggcttctgacccggcacgagggc
cgcaagcggctggtggcccgccttggcgccgaggccgaggaggggatcgacgcgctgatc
gcccaggctttggcctatgaacagaccgaagtgcccagcctgaccggctttctggtctgg
cttggtgccgacgagatcgagatcaagcggcagtccgacagtgcggggaccgcgctgcgg
gtgatgacggtgcatgggtcgaagggggtcgaggcgccgatcgtgatcctgcccgacacg
gcgaagctgcgcaattcgcagcgcggcgagctgctgctggccgagggcatcccgttctgg
aaatctgccgcggcgacgctgccgcccgtgctggcgcaggcgcaggccgaggttctggaa
cggcaaaggcacgaacgtctgcggctgctttatgtggcgatgacccgggcggagaaatgg
ctgatcgtcgccaccgcgggtgacgaggaggagggtgccgaaagctggcatgcgctggtc
tccggcgggatgaaatcggccggaacagagacggtttcggcgctttctgaacccttgcag
gcgctgggtccggtcttgcggttctcgcatggcgactggcctgaaaatggcacgccggtc
ggcgcggccgaggtggtgcggatcgcgctgccgaattgggcgcgggagcgggttcttcct
gtgcacaaaaccgccaaggcgctctcggcgtcggatctgggcgggccgaaggctctgccc
ggagagacggcggagctttcgaccgaagcggcgatgctgcgcgggcggcgcctgcatctg
ctgctggaacatctgccgcaggcgccgtcggaaacctggcccgatctggcgcagtcgctg
ctggggttcggcaatgacagagcctttcccgatgagatcgaggcgctgctgacccgggcg
cttcaggtgctgacggcggtcgaaaaggccggtttccttggccccgacaccctggccgag
gtggagctgaccgccgagctgccggagctgggcgggcagcggctgcacgggatcatcgac
cggctgcagatcgggcccgaccgcatccgggtgctggattacaaatcgaatgccatcgtg
ccgaacaccgcggccgaggtgccgctggggctggtccggcagatggcggcctatcgcgcg
gcgctgcggcagatctatccggggcgggcggtcgaatgcttcctgctttggaccgagacc
ggcgcggtcatgccgttgggtgacaccctgttggaggaagccctgctttccgccacagca
tcttga
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