KEGG   Rhodobacter capsulatus: RCAP_rcc00065
Entry
RCAP_rcc00065     CDS       T01213                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
rcp  Rhodobacter capsulatus
Pathway
rcp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rcp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RCAP_rcc00065 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rcp03021]
    RCAP_rcc00065 (rho)
   03019 Messenger RNA biogenesis [BR:rcp03019]
    RCAP_rcc00065 (rho)
Transcription machinery [BR:rcp03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     RCAP_rcc00065 (rho)
Messenger RNA biogenesis [BR:rcp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     RCAP_rcc00065 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N S1CSD-TOTE-2 NACHT AAA_22 OB_RNB AAA_25 AAA Spore_III_AA
Other DBs
NCBI-ProteinID: ADE83830
UniProt: D5AKI8
LinkDB
Position
complement(74710..75978)
AA seq 422 aa
MTERLNLSDLKAKSPKDLLAMAEDWEIENASTMRKGEMMFSILKEHAEEGVEIGGDGVLE
VLQDGFGFLRSPEANYLPGPDDIYVSPEMIRQYSLRTGDTVWGIIRAPGENERYFALTAV
EKINFEDPEKARHKVSFDNLTPLYPDERLKMEIEDPTIKDRSARIIDLVAPIGKGQRSLI
VAPPRTGKTVLLQNIAHSIEVNHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPA
TRHVAVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAFNTVVPSSGKVLTGGVDANALQR
PKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRVFP
AMDILKSGTRKEDLLVDQKDLQKTYLLRRILNPMGTTDAIEFLISKLKQTKTNGEFFDSM
NG
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgaccgaacgtttgaacctttccgatctcaaggcgaagagccccaaggaccttctggcg
atggccgaggactgggagatcgaaaacgcctcgacgatgcgcaagggcgagatgatgttc
tcgatcctgaaagagcatgccgaggaaggggtcgagatcggcggcgatggcgtgctggaa
gtgctgcaggacgggttcggcttcctgcgctcgcccgaggcgaactatctgcccggcccg
gatgacatctacgtgtcgcccgagatgatccggcaatacagcctgcgcaccggcgatacc
gtctgggggatcatccgcgcgccgggcgagaatgaacgctatttcgcgctgaccgcggtt
gagaagatcaacttcgaagatcccgaaaaggcgcgtcacaaggtcagcttcgacaacctg
acgccgctttatcccgacgagcggctgaagatggagatcgaagacccgacgatcaaggat
cgctcggcgcggatcatcgatctggtggcgccgatcgggaaggggcaacgctcgctgatc
gtggcaccgccgcgcaccgggaaaaccgtgctgctgcagaacatcgcgcattcgatcgag
gtgaaccaccccgaatgctacctgatcgtgctgctgatcgacgaacgtcccgaggaagtc
accgacatgcagcgctcggtgaagggcgaggtgatctcctcgaccttcgacgaaccggcg
acgcggcacgtggcggtggccgagatggtgatcgaaaaggccaagcgtctggtggaacat
aagcgagatgttgtgatcttgcttgattcgatcacaagacttgggcgggctttcaacacc
gtcgtgcccagctccggcaaggttctgaccggcggtgtggatgcgaatgcgctgcagcgg
ccgaagcgcttctttggcgcggcgcggaacatcgaagagggcggctcgctgacgatcatt
gcgacggcgctgatcgacaccggctcgcggatggacgaggtgatcttcgaggaattcaag
ggcaccggcaacagcgagatcgtgctggatcggaaggtcgccgacaagcgcgtcttcccg
gcgatggacattctcaaatcgggtacgcggaaggaagatctgctggtcgatcagaaagac
ctgcagaaaacctatctgctgcgccgcatcctgaacccgatggggaccacggatgcgatc
gaattcctgatttcgaagctgaagcagacgaaaaccaacggcgagttcttcgattcgatg
aacggctga

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