Rhodobacter capsulatus: RCAP_rcc00401
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Entry
RCAP_rcc00401 CDS
T01213
Symbol
udgA
Name
(GenBank) uracil-DNA glycosylase
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
rcp
Rhodobacter capsulatus
Pathway
rcp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RCAP_rcc00401 (udgA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcp03400
]
RCAP_rcc00401 (udgA)
Enzymes [BR:
rcp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
RCAP_rcc00401 (udgA)
DNA repair and recombination proteins [BR:
rcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RCAP_rcc00401 (udgA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
ADE84166
UniProt:
D5AM96
LinkDB
All DBs
Position
430085..430897
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AA seq
270 aa
AA seq
DB search
METRPAPEISYDAALAAFEWLIELGATDPVGDAPVNRYDLVTPEPAPAPPPQAETRAPRP
APVLAPVETVDPVAVARGLAARAATLDDLREAILGFDHCPLKRGARNTVFCDGNPKARVM
LIGEAPGKDEDAQGKPFVGRAGQLLDRMLAAVGLDRAAPDPGTAVYITNVMPWRPPGNRE
PEPAEIAMMGPFLARHVELVDPDLIVLMGNTACAAALNSRGITRLRGSWTQAFGRPALPT
LHPANLLRTPINKRLVWADLLELRAKLNAL
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atggagactcgccccgcccccgagatcagctatgatgccgctctggccgctttcgagtgg
ctgatcgagcttggcgccaccgatccggtgggcgatgcgccggtgaaccgctacgatctg
gtgaccccggaacctgcaccggctccgccgccccaggccgagacccgcgcgccgcgcccg
gcgccggtgctggcgccagtcgagacggtcgatccggtggcggtggcgcgcgggcttgcc
gcgcgggcggcgacgctggacgatctgcgcgaagcgatcctggggtttgaccattgcccg
ctgaaacggggcgcgcgcaacaccgtcttttgcgacggcaatccgaaggcgcgggtgatg
ctgatcggcgaggccccgggcaaggacgaggatgcgcagggcaagccctttgtcggccgc
gccgggcagctgcttgaccggatgctggcggcggtgggactggatcgcgccgcgcccgat
ccgggaacggcggtctatatcaccaatgtcatgccctggcggccgcccggcaaccgcgag
ccggagcccgcagaaatcgcgatgatggggccgtttctggcccggcatgtcgagctggtc
gaccccgatctgatcgtgctgatgggcaataccgcctgcgccgcggcgctgaacagccgc
ggcatcacccggctgcgcggcagctggacgcaggctttcggccgtccggcgctgccgacg
ctgcatccggcgaacctcttgcgcacgccgatcaacaagcggctggtctgggcggatctg
ctggaattgcgcgcgaaactgaacgcgctttga
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