Rhodobacter capsulatus: RCAP_rcc00793
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Entry
RCAP_rcc00793 CDS
T01213
Symbol
dnaE1
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rcp
Rhodobacter capsulatus
Pathway
rcp03030
DNA replication
rcp03430
Mismatch repair
rcp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RCAP_rcc00793 (dnaE1)
03430 Mismatch repair
RCAP_rcc00793 (dnaE1)
03440 Homologous recombination
RCAP_rcc00793 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rcp03032
]
RCAP_rcc00793 (dnaE1)
03400 DNA repair and recombination proteins [BR:
rcp03400
]
RCAP_rcc00793 (dnaE1)
Enzymes [BR:
rcp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RCAP_rcc00793 (dnaE1)
DNA replication proteins [BR:
rcp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RCAP_rcc00793 (dnaE1)
DNA repair and recombination proteins [BR:
rcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RCAP_rcc00793 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ADE84558
UniProt:
D5API6
LinkDB
All DBs
Position
873245..876754
Genome browser
AA seq
1169 aa
AA seq
DB search
MSDPRFIHLRVHTEYSLLEGAVPVKKLIKLCDAMNMPAIAVTDTNAMFAALEFSVLAQGA
GLQPIVGCQVSVAYEVAAPGEKPRLPAPVVLLAQNEAGYMNLMKLSSCLYVDKGGQLPQV
TLEDLEAHAEGLICLSGGAEGPVGKLLQHSQAGKARLLMERLAACYPTRLYVELQRHPGE
GGQLTEGERMTERPFVEMAYDLGLPLVATNDVYFPKSDMYEAHDAMICIAEGAYVDQIEP
RRRLTPQHYLKTEAEMAALFADLPEALENTVEIAKRCAFAAFKRKPILPRFADDEVEELR
RQAWEGLRARLAVIPHAVPVAEYEERLKFELGIIEQMGFPGYFLIVADFIKWGKSQGIPV
GPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIKYV
QGKYGRDKVGQIITFGALLSKAAVRDVGRVLQMSYGHVDKLSKMIPVEGVKPVSIEKALA
DEPRLREAAKSEEVVARLLNYAQAIEGLLRNASTHAAGVVIGDRPLDALVPLYQDPRSDM
PATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVNLILKSGRPLHVNPLGETLYTPAEGAA
NEINLIPIDDAKTYELYAAAKTVAVFQVESTGMMDALRRMKPTCIEDIVALVALYRPGPM
ENIPTYCEVKHGLRPLESLHPTIDPILKETQGIIVYQEQVMQIAQVMAGYSLGGADLLRR
AMGKKIAEEMAKERPKFIEGAKATHNIDAKKAGEVFDLLEKFANYGFNKSHAAAYAIVSY
QTAWLKANHPVEFMAGVMNCDIHLTDKLAIYTAEARRGLGIEVVPPCVNRSLATFDVVDQ
KLIYALGALKNVGVEAMRLIEKAREDKPFRDLVEFARRCDLKRIGKRPLEMLARAGAFDK
LDPNRKRVFESLESLMAWSAAVAEAKSSAQVSLFGEAGDDLPPPRLADTDDWLPGERLAE
EHKAIGFYLSGHPLDDYLPALKRKKVLTLADVTAKALGQGPFIGKIAGQVAARSERKSAK
GNRFAFVSLSDPTGPYEVTVFSDTLEACRAHLEPGQAVVLTVKVDVEGETVKMLCQTAAP
IDTVASDAGAGSGLLIHLETPEAVSSVAALFERIAAEGRVKSRGQVTFSVFDPEKRRRYQ
ITAGRELPVNPQVKGALRSLRGVVQVEEV
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatccccgattcatccacctgcgcgtgcacaccgaatattcgctgcttgagggc
gcggttccggtgaagaagctgatcaagctctgcgacgcgatgaacatgcccgccatcgcc
gtgaccgacaccaatgcgatgttcgcggcgctggaattttccgttctggcgcaaggggct
gggttgcaaccgatcgtcggctgccaggtttcggtcgcctatgaggtcgcggcccccggc
gagaagccgcgcctgcccgcgccggtcgtgctgcttgcccagaacgaggcgggctacatg
aatctgatgaagctttcctcctgcctttacgtcgacaagggcgggcagctgccgcaggtg
acgcttgaggatctggaggcccatgccgaggggctgatctgcttgagcggcggggccgag
gggccggtgggcaagcttttgcagcactctcaggcgggcaaggcgcggctgttgatggag
cggctggcggcctgttacccgacccggctttacgtcgagctgcagcgccatccgggcgag
ggcgggcagctgaccgagggcgagcggatgaccgagcggccctttgtcgaaatggcctat
gacctcggcctgccgctggtggcgacgaatgacgtctactttccaaaatccgacatgtac
gaggcgcatgatgcgatgatctgcatcgccgagggcgcctatgtcgatcagatcgagccg
cgccgccgcctgacgccgcagcattatctcaagaccgaggccgagatggcggccttgttt
gccgatctgcccgaggcgcttgaaaacacggttgaaatcgccaagcgctgcgcctttgcc
gcgttcaagcgcaagccgatcctgccgcggttcgccgatgacgaggtggaggaactccgc
cgtcaggcctgggagggactgcgcgcaaggctggccgtgataccgcatgcggtgccggtt
gccgaatacgaagaaagattgaaattcgaacttggcatcatcgaacagatgggctttccc
ggctacttcctgatcgtggccgacttcatcaaatggggcaagtcgcaggggattccggtc
ggtccggggcgggggtccggggcggggtcgctggtggcttacgcgctgacgatcaccgac
cttgacccgttgcgctacagcttgctgttcgagcgctttctgaaccccgagcgggtctcg
atgcccgacttcgacatcgacttctgcatggatcgccgcgaggaggtgatcaaatatgtg
cagggcaaatatggccgcgacaaggtcgggcagatcatcaccttcggtgcgcttttgtcc
aaggccgcggtccgcgacgtcggccgggtcttgcagatgtcttacggacatgtcgacaaa
ttgtcgaaaatgatcccggtcgagggggtgaagccggtctcgatcgaaaaggcgctggcg
gacgagccgcgcctgcgcgaggcggcgaaatccgaagaggtggtggcgcggcttctgaac
tatgcccaggcgatcgaggggctgttgcgcaacgcctcgacccacgcggcgggggtggtg
atcggcgaccggccgctcgatgcgctggtgccgctttatcaggacccgcgctcggacatg
cccgcgacccagttcaacatgaaatgggtcgaacaggcggggctggtgaagttcgacttt
ctggggctgaagacgctgacggtgattcagaacgccgtcaacctgatcctcaaatccggc
cgcccgctgcatgtaaaccctttgggcgaaacgctttatacgcccgccgagggggccgcg
aacgagatcaacctgatcccgatcgacgatgccaagacctatgaactttacgcggcggcc
aaaacggtcgcggtgttccaggtcgaatccaccggcatgatggatgcgctgcggcggatg
aaaccgacctgcatcgaggatatcgtggcgctggtggcgctctatcgtcccggcccgatg
gagaacattccgacctattgcgaggtgaaacacgggctgcggccgctggaatcgctgcat
ccgaccatcgacccgatcctgaaggaaacgcagggcatcatcgtctatcaggaacaggtg
atgcagatcgcgcaggtcatggcgggctacagccttggcggcgccgaccttttgcgccgg
gcgatggggaagaaaatcgccgaggaaatggcaaaggagcgtccgaaattcatcgagggc
gccaaggccacgcacaacatcgacgcgaaaaaggcgggtgaagtctttgacctgctggag
aaattcgcgaactacggcttcaacaagtcgcacgccgccgcctatgcgatcgtgtcctat
cagaccgcctggctgaaggcgaaccaccccgtcgaattcatggccggggtgatgaactgc
gatatccatctgaccgacaagctggcgatctacaccgccgaggcgcggcgggggctgggg
atcgaggtggtgccaccctgcgtgaaccgctcgctcgccacctttgacgtcgtggatcag
aagctgatctatgcgctcggcgccttgaagaatgtcggcgtcgaggccatgcggctgatc
gaaaaagcccgcgaggacaagcccttccgcgatctggtcgagttcgcgcggcgctgcgat
ctgaaacggatcggcaagcggcccttggagatgctggcgcgggccggggctttcgacaag
cttgatccgaaccgcaaacgcgtgttcgaaagcctcgaatcgctgatggcctggtcggcg
gcggtggccgaggcgaaatcctcggcgcaggtgtcgctgtttggcgaggcgggcgacgat
ctgccgccgccgcggctggccgataccgacgactggctgccgggcgaacgtctggccgaa
gagcacaaggccatcggcttttatctttcgggccatccgcttgatgactatctgcctgct
ttgaaacgcaaaaaggtgctgaccctggccgatgtcacggccaaggcgctggggcagggg
cctttcatcggcaagatcgcgggccaggtcgcggcgcggtcggaacgcaaatcggccaag
ggcaaccgctttgccttcgtgtcgctttcggaccccaccggcccttacgaggtcacggtt
ttttccgacacgctcgaagcctgccgcgcgcatctggagccggggcaggcggtggtgctg
acggtcaaggtcgatgtcgagggcgagacggtgaagatgctgtgccagaccgcggcgccg
atcgacaccgtggcgagcgacgccggggccggatcggggctgctgatccatctggaaacg
cccgaggcggtctcctcggtggctgcacttttcgaacgtattgccgcggaaggacgggtg
aaatcgcgcggacaagtgaccttttccgtctttgacccggaaaagcgccgtcgctatcag
atcaccgccggacgtgagctgccggtgaacccgcaggtcaagggcgctttgcgcagcctg
cgcggcgtggtgcaggtggaggaagtctga
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