Rhodobacter capsulatus: RCAP_rcc01171
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Entry
RCAP_rcc01171 CDS
T01213
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rcp
Rhodobacter capsulatus
Pathway
rcp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RCAP_rcc01171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcp03019
]
RCAP_rcc01171
03009 Ribosome biogenesis [BR:
rcp03009
]
RCAP_rcc01171
Enzymes [BR:
rcp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RCAP_rcc01171
Messenger RNA biogenesis [BR:
rcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RCAP_rcc01171
Ribosome biogenesis [BR:
rcp03009
]
Prokaryotic type
rRNA helicases
RCAP_rcc01171
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
TIP49
Motif
Other DBs
NCBI-ProteinID:
ADE84929
UniProt:
D5ARQ8
LinkDB
All DBs
Position
1239638..1241650
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AA seq
670 aa
AA seq
DB search
MTDFPHLPAALAEALSARGYDALTPVQDAVTRPELAGRDLLVSAQTGSGKTVAFGLAISA
ELLGENGISPYPDLPRALVVAPTRELAVQVSRELSWLYEKAGAVITGAVGGMDARAERRA
LERGAHIVVGTPGRICDHIRRGALDLSALSAVVLDEADEMLDMGFREDLEFILESAPEGR
RTLMFSATVPREIERLAQTFQREAERISTVSSRESHADIDYRGVLVDRSDRENAIVNLLR
LHEAERAIVFCSTRAAVTHLTGKLLNRGFSVVALSGELTQDERSRALQMMRDGRARVCIA
TDVAARGIDLPGLELVIHADLPMNREGLLHRSGRTGRAGRKGLSAIVVPLNVRAKAERLL
REAQVSVTWEGAPTPEDILARDQERLLTEPALTEPATAEEFDAIARLLETHEPKQLAAAV
LRHFRAARTAPEDVIPVSVGEGPKPRAREEFGAARWYRLSMGHDQWVDPKWLLPMLCRAG
DLTRRDIGMIRVMQDQTFVQIHESMADRFEAGLGADRVMEGKCTVENLPGMPEGLDRPAP
KPDRWSKTGDRKPYEKKPYAPRGSYGDKPAPKPHRKGPPREEGAERAPRFEKTERFEKSD
RAERPAHPARKPAGDAPAPKPRKAAPWAREGGHGAAAKEGKPAPKYGAKSFAKPGAKPAG
KPGPKKPRSF
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacttcccccatcttcccgcggcgcttgccgaggctctgtccgcgcggggctat
gatgccctgacgcccgttcaggacgcggtgacgcgccccgagctggccggacgggatctc
ctcgtctcggcgcagacggggtcgggcaagacggtggccttcgggctggcgatctcggcc
gagttgctgggcgaaaacggcatctcgccttacccggatctgccgcgcgcgctggtggtg
gcgccgacgcgcgaattggccgtgcaggtcagccgcgagctgagctggctttacgaaaag
gccggggcggtgatcaccggcgccgtcggcggcatggatgcccgggccgaacgtcgggcg
ctggaacgcggcgcgcatatcgttgtgggcacgcccgggcggatctgcgatcacatccgc
cgcggggcgctggatctgtcggcgctctcggccgtcgtcttggacgaggccgacgagatg
ctcgacatgggctttcgcgaagatctggaattcattctggaatccgcccccgaggggcgc
cggacgctgatgttttcggcgaccgtcccgcgcgagatcgaacgtctggcgcagaccttc
cagcgcgaggcggagcggatttccaccgtgtcctcgcgcgagagccatgccgatatcgac
tatcgcggcgtgctggtggaccgctctgaccgtgaaaatgccatcgtcaacctgctgcgc
ctgcacgaggcggaacgcgccatcgtcttctgctcgacccgggcggcggtgacgcatctg
accggcaagcttctgaaccggggcttctcggtcgtggcgctctcgggcgagctgacgcag
gacgaacgctcgcgcgcgctgcagatgatgcgcgacggccgggcgcgggtctgcatcgcc
accgacgttgccgcgcgcggcatcgaccttccggggctggagctggtgattcacgccgat
ctgccgatgaaccgcgaggggctgttgcaccgttcgggccgcaccggccgggccgggcgc
aaggggctttcggccattgtcgtgccgctgaacgtgcgcgccaaggccgagcggcttctg
cgcgaggcgcaggtttcggtgacctgggaaggggcgccgacgcccgaggatattctggcc
cgcgatcaggaacgtctgctgacggaaccggcgctgaccgagcccgcgacggccgaggaa
ttcgacgccatcgcccggcttttggaaacgcatgagccgaagcagctcgccgccgccgtg
ctgcgccatttccgcgccgcccgcaccgcgcccgaggatgtgatcccggtcagcgtgggc
gaggggccgaagccccgcgcgcgcgaggaattcggggctgcgcgctggtatcggctctcg
atgggccatgaccaatgggtggacccgaaatggctgttgccgatgctgtgccgcgcgggc
gatctgacccggcgcgacatcgggatgatccgggtgatgcaggatcagaccttcgtgcag
atccatgaatcgatggccgaccgtttcgaagcgggtctgggcgccgatcgggtgatggaa
ggcaaatgcacggtcgaaaacctgccgggcatgcccgagggcctcgaccgtccggcgccg
aagcccgaccgctggagcaagaccggcgatcgcaagccctatgagaagaaaccctatgcc
ccgcgcggcagctatggcgacaaaccggcgccgaagccgcatcgcaagggcccgccgcgc
gaagagggggccgaacgcgcgccgcggtttgaaaagaccgagcgtttcgagaaatccgac
cgcgccgagcgcccggcccatccggcccgcaagcctgcgggcgacgcgcccgcgccgaaa
ccccgcaaggccgccccctgggcccgcgaaggcggccacggtgccgccgcgaaagagggc
aaaccggcgccgaaatacggcgcgaaaagctttgccaagcccggcgcgaaacccgcgggc
aagcccggcccgaaaaaaccgcgcagcttctga
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