Rhodobacter capsulatus: RCAP_rcc01873
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Entry
RCAP_rcc01873 CDS
T01213
Name
(GenBank) peptidoglycan-binding domain 1 protein
KO
K21470
L,D-transpeptidase YcbB
Organism
rcp
Rhodobacter capsulatus
Brite
KEGG Orthology (KO) [BR:
rcp00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rcp01002
]
RCAP_rcc01873
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rcp01011
]
RCAP_rcc01873
Peptidases and inhibitors [BR:
rcp01002
]
Cysteine peptidases
Family C82
RCAP_rcc01873
Peptidoglycan biosynthesis and degradation proteins [BR:
rcp01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
RCAP_rcc01873
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Scaffold
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
ADE85618
UniProt:
D5AUH9
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All DBs
Position
complement(2025972..2027594)
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AA seq
540 aa
AA seq
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MTASCLGVGRAALVAMMMAGAALAPFVAAGPARAQMLSGFAQAVAETAAAEPALAAFYAA
RGHAPLWTTAEAASRRAAFFAALDQADANGLPVARYRAEELRARFAAIETERERGQLDAA
MSLAYLAWARDISSGALEPKKIDAGIVREIRRPDPQALLNGLLASPAPARFLRDLAPKSP
RYAALVKARLDLQAEIATGGWGPEVAAKRLGPGDSGPGVIALRDRLIRMGYLRRSVSATY
DGDLHRAVQTYQLDQGIKADGVAGEGTLARINRTPEERMKSILVALERLRWMNGLDLGKR
HIWVNLPDFTARIVDDGKMSFETVTVVGMNQGDRRTPEFSDVMEMMVINPSWSVPRSITV
KEYLPMMQRNPGAAGHIQLVDSRGRAVARESVNFAAYNARNFPFAMRQPPSNGNALGLVK
FLFPNPYNIYLHDTPSKSLFQKDVRAFSHGCIRVGRPFDLAYALLAAQEADPEGYFKSVL
KTGAETTVKLRDPVPVHLVYFTAFPNAQGRIEYRDDVYGRDAALFAALDKAGVALAPLTN
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgactgcatcttgtcttggggttggccgggctgcccttgttgcgatgatgatggccggg
gcggcgctggcgccctttgtggcggcgggtccggcccgggcgcagatgctttcgggcttt
gcccaggcggtggcggaaacggcggcggccgagcccgcgctggccgccttttatgccgcg
cgtggccatgcgccgctctggaccaccgccgaggccgcgtcgcggcgggcggccttcttt
gccgcgctggatcaggccgatgccaatggcctgccggtggcgcgctatcgcgccgaggag
ctgcgcgcccggttcgccgcgatcgagaccgaacgcgaacgcggtcagctggatgcggcg
atgtcgctggcctatctcgcttgggcgcgggacatttcctcgggcgcgctcgagccgaag
aagattgatgccgggatcgtgcgcgagatccgccgccccgatccgcaggcgcttttgaac
gggctgcttgccagccctgcgccggcacggttcctgcgcgatctggcgccgaaatcgccg
cgctatgcggcgctggtcaaggcgcggcttgatctgcaggccgagatcgccacgggcggc
tggggccccgaagtcgcggcgaagcggcttggcccgggcgacagcggcccgggcgtcatc
gcgctgcgcgaccggctgatccgcatgggctatctgcgccgttcggtcagcgcgacctat
gacggcgatctgcaccgggcggtgcagacctatcagctggatcaggggatcaaggccgat
ggcgtcgcgggcgagggtacgctggcgcggatcaaccgcacccccgaggagcggatgaaa
tcgatccttgtggcgctggagcggctgcgctggatgaacggcctcgatctgggcaagcgg
cacatctgggtgaacctgcccgatttcaccgcccgcatcgtcgatgacggcaagatgagc
ttcgagacggtgaccgtggtcggcatgaaccagggcgaccgccgcacgccggaattttcc
gacgtgatggagatgatggtgatcaacccgagctggtcggtgccgcgctcgatcacggtc
aaggaatatctgccgatgatgcagcgcaatccgggcgcggcggggcatatccagctggtc
gacagccggggccgggcggtggcgcgcgagtcggtgaatttcgccgcctataacgcgcgc
aacttcccctttgcgatgcgtcagccgccctcgaacggcaatgcgctggggttggtgaag
ttcctcttccccaatccctacaacatctatctgcatgacacgccgtcgaaatccctgttt
caaaaggatgtccgcgccttcagccatggctgcatccgggtcggtcggcccttcgatctg
gcctatgcgcttctggccgcgcaggaagccgaccccgagggctatttcaaatcggtgctg
aagaccggcgccgagacgacggtgaagctgcgcgatccggtgccggtgcatctggtctat
ttcaccgccttcccgaatgcccagggccggatcgaatatcgtgacgatgtctacgggcgg
gatgccgcgctctttgccgctttggacaaggcgggggtggcattggcgccgctgacgaat
taa
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