Rhodobacter capsulatus: RCAP_rcc02165
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Entry
RCAP_rcc02165 CDS
T01213
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rcp
Rhodobacter capsulatus
Pathway
rcp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RCAP_rcc02165 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcp03019
]
RCAP_rcc02165 (rne)
03009 Ribosome biogenesis [BR:
rcp03009
]
RCAP_rcc02165 (rne)
Enzymes [BR:
rcp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RCAP_rcc02165 (rne)
Messenger RNA biogenesis [BR:
rcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RCAP_rcc02165 (rne)
Ribosome biogenesis [BR:
rcp03009
]
Prokaryotic type
rRNA processing factors
RCAP_rcc02165 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ADE85895
UniProt:
D5AVB3
LinkDB
All DBs
Position
complement(2334176..2337031)
Genome browser
AA seq
951 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVDEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPVADRQALLEEERLAAEAEEAEENRSRSRRSRSRSGSSR
SGGQQARAEKTAGHDAVVRSEDIPGMAVIDEAAPGEEAGALEPVIAEAGSFDAVPEPAVA
PEEGVAEAEAEIVEAGEAEEAEAPHEVEEEHDHDHEHDHDHHVHPVDDEIESVAEEDVAE
EIHAPRRPRARRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTAR
GGGISRKITNAADRKKLKEIASEMEVPQGAGLIIRTAGSQRTRTEIRRDYEYLMRLWEQI
RELTLKSIAPAPIYEEGDLIKRSIRDLYSKDIDEVLVEGERGYRVAKDFMKMIMPSHAKN
VKHYNEQLPLFARFQVESYLASMFNPVVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSI
EETALKTNLEAAEEISRQLRLRDLAGLIVIDFIDMEERKNNAAVEKRLKEKLKTDRARIQ
VGRISGFGLMEMSRQRLRPGMLESTTQPCPHCHGTGLIRSDDSLALQVLRAIEEEGTRKR
SREVLVKCPVAVANYLMNAKREHIASIEARYGMAVRIEADPTLVSPDFSIEKFKTATRIV
PEVHSAVVHASAELMAEIDEEEIVEEEEDEVEEAAPAVAAAATGEPGEGAPKKKKRRRRR
RKKNGAPGGTDLAAEGDEGDEGEDDGEDEGDDASDEDAAEDAARAAAAAELAEVSLPILD
AEASAPVAEAVAEAEAAPEAPAPKASRSRSRTSKAKKEAEVVEGAEAPVKKTRTRTTSKA
KKEAEAAAAAAAAAAAEAEAPVAEAAPAPVAEAEAAEAPAPVEAVVEAAPGVEAAPEPVV
ETAPAPVADVAPEAAPEPEAEPEAGSEPEAETDPGTPEDPKPKKRGWWSLG
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaagatgcttatcgatgccacccacgcggaagaaacccgcgtcgtggtggtg
gacggcaacaaggtcgacgagttcgactttgaaacagtaaacaagcggcagctggccggg
aatatctatctggcgaaagtgacgcgggtggagccttcgctccaggccgcttttgtcgat
tacggcggcaaccgccacggcttcctcgccttcgccgagatccacccggattactaccag
atcccggtggccgaccgtcaggcgcttctggaagaggaacgtctggccgcggaggccgaa
gaggccgaggaaaaccgctcgcgctcgcgccggtcgcggtcgcgctccgggtcctcgcgc
tcgggcgggcagcaggcccgggccgagaagacggcgggccatgatgccgtcgtgcgctcg
gaagacattccgggcatggcggtgatcgacgaggcggcgccgggcgaagaggccggggcg
cttgaacccgtgatcgccgaggccggaagcttcgatgcggtgccggaaccggctgttgcc
cccgaagagggcgtggccgaggcggaggccgagatcgtcgaggcgggcgaggccgaagag
gccgaggccccgcacgaggtcgaggaagagcacgaccacgaccatgagcatgaccacgat
caccatgtccatcccgtcgatgacgagatcgaatcggtggccgaggaggacgtggccgag
gaaatccatgcgccccgtcgcccgcgcgcgcggcgctacaagattcaggaagtgatcaag
gtccggcagatcatgctggtgcaggtggtcaaggaagaacgcggcaacaagggcgcggcg
ctgaccacttacctgtcgcttgccggtcgctactgcgttctgatgccgaacacggcgcgg
ggcggtggcatttcgcgcaagatcaccaatgcggccgaccgcaagaagctgaaggaaatc
gcctcggaaatggaggtgccgcagggcgccgggctgatcatccgcaccgcgggcagccag
cgcacccgcaccgagatccgccgcgactatgaatatctgatgcggctgtgggaacagatc
cgcgagctgaccctcaaatcgatcgccccggcgccgatttacgaggaaggcgatctgatc
aagcgctcgatccgcgatctgtattcgaaggacatcgacgaggttctggtcgagggcgag
cgcggctatcgcgtcgccaaggacttcatgaagatgatcatgccgtcccacgcgaagaac
gtgaagcattacaacgagcagctgccgctgttcgcgcgcttccaggtcgaaagctatctg
gcctcgatgttcaacccggtggtgcagctgaaatcgggcggctatatcgtcatcggcgtg
accgaggcgctggtcgccatcgacgtcaactcgggccgggccaccaaggaaggctcgatc
gaggagaccgcgctcaagaccaaccttgaggccgccgaggagatcagccgtcagctgcgg
ttgcgcgatctggccggtctgatcgtcatcgacttcatcgacatggaagagcggaagaac
aacgccgccgtcgagaagcgtctgaaagagaagctgaaaaccgaccgcgcgcggattcag
gtggggcggatctcgggcttcggcctgatggagatgtcgcgtcagcggctgcgtccgggg
atgctggaatcgaccacgcagccctgcccgcattgccatggcaccgggctgatccggtcc
gatgacagtctggcgctgcaggttctgcgcgcgatcgaggaagagggcacccggaaacgg
agccgcgaggtgctggtgaaatgcccggtcgccgtcgccaactatctgatgaacgccaag
cgcgaacatatcgcttcgatcgaggcgcgctatggcatggcggtgcggatcgaggctgat
ccgacgctggtcagccccgatttcagcatcgagaagttcaagaccgcgacccggatcgtg
cccgaggtgcatagcgccgtcgtgcatgccagcgccgagctgatggccgagatcgacgag
gaagagatcgtcgaggaggaagaggacgaggtcgaagaggccgcgcccgcggtggctgcg
gccgcgacgggcgaacccggcgaaggcgcgccgaagaagaagaaacggcgtcggcggcgg
cggaagaaaaacggcgctccgggcgggaccgatctggcggccgagggcgacgagggagat
gagggcgaggacgacggcgaggacgagggcgacgatgcctcggacgaggatgccgccgaa
gacgccgcccgcgccgcggcggcggccgagctggccgaggtgagcctgccgattctggac
gccgaagcgtcggcgcccgtggccgaggcggttgccgaagcggaagccgcgcccgaagcg
ccggcgccgaaggcgagccggtcgcggtcgcgcaccagcaaggcgaagaaggaggccgag
gttgtcgagggcgcggaagcgccggtgaagaagacccggacccgcacgacctcgaaggcg
aagaaggaagccgaggcggccgccgcggcggcggctgcggccgcagcggaagcggaagcc
cccgttgccgaggctgcgcccgcgccggttgccgaagccgaggctgccgaagccccggcc
ccggtcgaggcggtggtcgaagccgcgccgggtgtcgaggccgcgcccgagccggtcgtc
gaaactgcgcccgcgccggtggcggatgtggcccccgaggctgcgcccgaacccgaggcc
gaacccgaggctgggtctgaacccgaagccgagacggatccgggcacgcccgaggatccg
aagccgaagaaacgcggctggtggtcgctgggctga
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