Rhodobacter capsulatus: RCAP_rcc02515
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Entry
RCAP_rcc02515 CDS
T01213
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rcp
Rhodobacter capsulatus
Pathway
rcp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RCAP_rcc02515 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcp03019
]
RCAP_rcc02515 (rhlE)
Enzymes [BR:
rcp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RCAP_rcc02515 (rhlE)
Messenger RNA biogenesis [BR:
rcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RCAP_rcc02515 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
AAA_30
DEDD_Tnp_IS110
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ADE86245
UniProt:
D5AMG9
LinkDB
All DBs
Position
2699934..2701280
Genome browser
AA seq
448 aa
AA seq
DB search
METFENLGLAPMLLKNLAGLGLTKPTPIQAQGIPHIVRGRDILGLAQTGTGKTAAFGLPM
LTRILAYGKRPAPKTVRALVLAPTRELATQIHDNLAAYAEGAPVRIQRVVGGASLNVQAE
KLSKGCDVLIATPGRLIDLIERRALVLSETKYLVLDEADQMLDIGFIHALRRIAKLIPAE
RQTLLFSATMPKLMEELAASYLSDPIRVEVATPGKAAEKIDQGVHFTTQGEKAALLAEYI
SRHPGELAVVFNRTKHGSDKLTKLLEKWGFSVTAIHGNKSQGQRERALSAFRASEVQVLV
ATDVAARGLDIPQVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAVAFCGPLEMSDLRAI
EAAMGAKIPVIGGEAHAEGGSRPAPGRSGQPKKPHRGQGPKPAREGEAKPARKPDAKPAA
KRGGRAEGHAPAGGQAAPKRPARAQRGH
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
ttggaaacctttgaaaacctcggccttgcgccgatgctgctgaaaaatcttgcgggcctt
ggcctgaccaagccgacgccgatccaggcgcagggcattccgcatatcgtgcgcggccgc
gacatcctgggcctggcccagaccgggaccggcaagaccgccgctttcggcctgccgatg
ctgacccgcatcctggcctatggcaagcgcccggcgccgaaaaccgtgcgtgcgctggtg
cttgcgccgacgcgggaacttgcgacgcagatccatgacaaccttgccgcctatgccgag
ggcgccccggtgcgcatccagcgcgtcgtcggcggggcttcgctgaacgtgcaggcggaa
aaactgtccaagggctgcgacgtgctgatcgccacgccgggccggttgatcgacctgatc
gaacgccgcgcgctggtgctgagcgagacgaaatatctggtgctcgacgaggccgaccag
atgctcgacatcggtttcatccatgcgctgcgccgcatcgccaagctgatcccggcagag
cggcagacgctgctgttctcggccacgatgccgaagctgatggaggaactggcggccagc
tacctctccgacccgatccgggtcgaggtcgccacccccggcaaggccgccgaaaagatc
gaccagggcgtgcatttcaccacccagggcgaaaaggcggcccttctggccgaatatatc
tcgcgccatccgggcgaattggccgtggtcttcaaccgcaccaagcatggctcggacaag
ctgaccaagcttttggaaaaatggggtttttcggtcaccgccatccatggcaacaaaagc
caggggcagcgggaacgggcgctttcggcgttccgcgccagcgaggtgcaggtgctggtg
gcgaccgatgtggccgcgcgcgggcttgatattccgcaggtggcgcatgtctacaactac
gacctgccgaacgtgccggaaaactacgtgcaccgcatcggccgcaccgcgcgggccggg
cgcgatggccgcgccgtggccttctgcggtccgctcgaaatgagcgatctgcgcgcgatc
gaagccgcgatgggggcgaagatcccggtcatcggcggcgaagcccatgccgaaggcggc
agccgtcccgcgccggggcgcagcggccagccgaagaaaccgcatcgcggtcagggcccg
aaacccgcccgcgagggcgaggcgaaaccggcccgcaagcccgatgcgaaaccggcggcg
aaacgcggcggccgcgccgagggacatgcgcccgcgggcggacaggccgcgccgaagcgt
ccggcccgtgcgcaacgcggccactga
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