Rhodobacter capsulatus: RCAP_rcc03063
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Entry
RCAP_rcc03063 CDS
T01213
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rcp
Rhodobacter capsulatus
Pathway
rcp03410
Base excision repair
rcp03430
Mismatch repair
rcp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RCAP_rcc03063 (recJ)
03430 Mismatch repair
RCAP_rcc03063 (recJ)
03440 Homologous recombination
RCAP_rcc03063 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcp03400
]
RCAP_rcc03063 (recJ)
DNA repair and recombination proteins [BR:
rcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RCAP_rcc03063 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RCAP_rcc03063 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RCAP_rcc03063 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
SOGA1-2-like_CC
GapR_DNA-bd
Motif
Other DBs
NCBI-ProteinID:
ADE86787
UniProt:
D5AQJ8
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All DBs
Position
3254858..3256591
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AA seq
577 aa
AA seq
DB search
MTSFLNVDTSLTGRRWVGPSLEADRLAEAMAQATHLPLPLARVLVARGVTPEAAAGFLEP
TLRDLLPDPHRLKDMEKAAARFLRALRSREKIAIFADYDVDGGSSAALLICFLRAFGVTP
TLYIPDRIDEGYGPNVPAMQALGREHGLIVCVDCGTLSHAPVAAAAPADVVILDHHLGGE
TLPPAVACVNPNRQDEPGDLGHLCAASVVFLMLVEANRQLRAEGVKGPDLMAMLDLVALA
TVADVAPLLGVNRALVRQGLKVMARRERPGLVALSDVARLDKAPTAYHLGFLLGPRVNAG
GRIGAADLGARLLSTDSAAEAAALAERLDRLNSERREIENRVRDAALTQAEARGLDGPLV
WAAGEGWHPGVVGIVAARLKEATNRPAVVIGLEGGLGKGSARSVAGVDLGAAVQRVAAEG
LLLKGGGHRMAAGLTLPRAVEPRWKAAECSPGRARHGGPADLRLDGLLMPGAATPALIED
LDRAGPYGQAAPSPRFAFPAMAILNARRIGESHLRLSFGDGLGAKLDAIAFGAFDGPLGP
ALSAGGAGRFHLAGKLELDSWGGRSKVQLRLDDAARA
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgaccagctttctgaatgtcgatacctccttgaccgggcggcgctgggtcggccccagc
cttgaagccgatcgtctggccgaagcgatggcgcaagccacccacctgcccctgccgctc
gcccgggttctggtcgcccgcggcgtgacgcccgaagccgcggcgggatttctggaaccg
accctgcgcgacctgctgcccgatccgcaccgcctgaaagacatggaaaaggcggcggcg
cgatttctgcgggcgctccgaagccgcgaaaagatcgcgatcttcgccgattacgatgtc
gacggcggctcttcggcggcgcttctcatctgctttctgcgcgccttcggcgtcaccccc
acgctctacatccccgaccgcatcgacgagggctacggccccaatgtccccgcgatgcag
gcgcttggccgcgagcacgggctgatcgtctgcgtcgattgcggcacgctcagccacgcg
ccggtcgccgccgccgcccccgccgatgtcgtcattctcgaccaccatctgggcggcgag
accctgccccccgcggtcgcctgcgtgaacccgaaccggcaggacgaaccgggcgatctg
gggcatctttgcgccgcttcggtggtcttcctgatgctggtcgaggcgaaccggcagctg
cgcgccgagggggtcaagggccccgatctgatggcgatgctcgatcttgtcgcgctggcg
accgtcgccgatgtggcgccgcttctgggcgtgaaccgggcgctggtgcggcaggggctc
aaggtcatggcccggcgcgagcggccggggctggtggcgctttccgacgtcgcccggctc
gacaaggcgccgacggcctatcatctgggctttctgctgggaccgcgggtcaatgccggg
ggccggatcggcgccgccgatctgggggcgcggttgctctccaccgacagcgccgccgag
gccgcggccttggccgagcggctcgaccggctgaacagcgaacggcgcgagatcgagaat
cgcgtccgcgatgccgcgctgacccaggccgaggcgcgcggcctcgacggcccgcttgtc
tgggcggcgggcgagggctggcatccgggcgtcgtcggcatcgtcgcggcgcggctgaag
gaggcgacgaaccgccccgccgtggtgatcgggctggaaggcggccttggcaagggctcg
gcgcgctcggtggcgggggtcgatctgggcgcggcggtgcagcgcgtcgcggccgagggg
cttttgctcaagggcggcgggcaccgcatggccgcgggtctgaccctgccgagggcagtg
gaaccgcgatggaaggctgccgagtgttcgcccggcagggcgcggcacggcggcccggcc
gatctgcggctggacgggctcctgatgccgggcgccgcgacgcccgcgctgatcgaggat
ctcgaccgcgccggcccctatggccaggcggcgccctcgccgcgctttgcctttcccgcg
atggcgatcctgaacgcccggcggatcggcgagagccacctgcggctcagctttggcgac
gggcttggcgcgaagctcgacgccatcgcctttggcgctttcgacggcccgctgggcccc
gcgctctcggcgggaggggcaggccggtttcatctggcgggcaagcttgaactggacagc
tggggcggccgctccaaggtgcaattgcgtcttgacgatgccgcacgggcctga
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