Rhodococcus coprophilus: NCTC10994_01396
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Entry
NCTC10994_01396 CDS
T06666
Symbol
deaD
Name
(GenBank) dead/deah box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rcr
Rhodococcus coprophilus
Pathway
rcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10994_01396 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcr03019
]
NCTC10994_01396 (deaD)
03009 Ribosome biogenesis [BR:
rcr03009
]
NCTC10994_01396 (deaD)
Enzymes [BR:
rcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC10994_01396 (deaD)
Messenger RNA biogenesis [BR:
rcr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC10994_01396 (deaD)
Ribosome biogenesis [BR:
rcr03009
]
Prokaryotic type
rRNA helicases
NCTC10994_01396 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
HEM4
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
SQI30079
UniProt:
A0A2X4TUT0
LinkDB
All DBs
Position
1:complement(1550365..1552212)
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AA seq
615 aa
AA seq
DB search
MSEIEDAPNQETAAITFADLDIDPRVLQALSDVGYETPSPIQAATIPPLLEGRDVVGLAQ
TGTGKTAAFAVPILSRIDTTKKRPQALILAPTRELALQVAEAFGKYSTHIPGLHVLPIYG
GQAYGVQLAGLRRGAQVIVGTPGRVIDHLAKGTLDISELEYLVLDEADEMLTMGFQEDVE
RILADTPDTKQVALFSATMPGAIRRLSKQYLKNPQEITVKSKTTTSANTTQRWVSVSHQR
KLDALTRILEVESFEAMIIFVRTKQATEDLAEKLRARGFSAAAINGDIVQAQRERTIGQL
KSGALDILVATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRTGDALLFVTP
RERHLLKSIERATRQPVAEMQLPSVDDVNAQRVSKFYDAITEALASENLQLFRTFIEDYE
REHDVPLADIAAALAVMSRDGESFLMEVEPEPVAQPRREPREQRERPARRFDEGPKVGRD
GQELTTYRISVGKRHRVQPGAIVGAIANEGGLRRGDFGHISIRADHSLVELPKDLSPQTL
EALRATRISGVLIQLQPDSGAPGGRPSSNYRGRDDRGDRGGDRRGGGERRSGDFTHRKDR
GDRREQGGGGFRGRD
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaatcgaagacgccccaaatcaggagaccgcagctatcacgtttgccgatctc
gacatcgacccccgtgtgctgcaggccctttcggacgtgggctacgagaccccgtcgccg
atccaggcggcgaccatacccccactgctggagggacgggacgtcgtcggtctcgctcag
accggcaccggcaagacggccgcgttcgcggtgccgatcctctcccggatcgacaccacg
aagaagcgcccgcaggcgctgatccttgcgcccacccgtgagctcgcgctgcaggtcgcg
gaagctttcggcaagtactccacgcacattcccgggctccatgtgctgcccatctacggc
ggccaggcatacggtgtccagctggcaggattgcgccgcggcgcacaggtcatcgtcggt
acgcccggacgtgtgatcgatcacctcgccaagggaaccctcgacatctcggaactcgag
tacctcgtcctcgacgaggccgacgagatgctcacgatgggcttccaggaggacgtcgag
cggatcctcgccgacacgcctgacaccaagcaggtcgcgttgttctcggcgaccatgccg
ggcgcgatccgtcgcctgtcgaagcagtacctgaagaacccgcaggaaatcaccgtcaag
tcgaagacgacgacctccgcgaacaccacccagcgctgggtctcggtgtcccaccagcgc
aagctcgacgcgctgacccggatcctcgaggtcgagtcgttcgaagcgatgatcatcttc
gtccgcacgaagcaggccacggaggatctcgccgagaagctgcgtgcccgcggattctcc
gccgccgcgatcaacggcgacatcgtccaggcgcagcgtgagcgcaccatcggccagctc
aagagcggtgcgctcgacatcctggtggcgaccgacgtcgccgcgcgcggcctcgacgtc
gaacgcatcagccacgtggtcaactacgacatcccgcacgacaccgagtcgtacgtgcac
cgtatcggccgtaccggtcgcgccggccgtaccggcgacgcgctgctgttcgtgaccccg
cgtgagcggcacctgctcaagtcgatcgagcgggccacccggcagccggtcgccgagatg
cagctacccagcgtcgacgacgtcaacgcccagcgtgtctcgaagttctacgacgcgatc
accgaggcgctcgcgtccgagaacctccagctgttccgtaccttcatcgaggactacgag
cgtgagcacgacgtgccgctcgccgacatcgcggcagctctcgctgtgatgtcccgcgac
ggcgagtcgttcctcatggaggtcgagcccgagcccgtcgcacagccgaggcgcgagccg
cgcgagcagcgcgagcgtccggcacgtcgattcgacgaaggcccgaaggtcggtcgcgac
ggccaggagctgaccacctaccggatctccgtgggcaagcggcaccgtgtgcagccgggt
gcgatcgtcggagccatcgccaacgagggtggcctccggcgcggtgacttcgggcacatc
agcatccgcgccgaccacagcctggtggaactgcccaaggatctgtcgccgcagacgctc
gaagcgctgcgtgccactcggatctcgggtgtgctcatccagcttcagccggattcgggt
gcccccggtggccgcccgagcagcaactaccgtggccgcgacgaccgtggagaccgcggc
ggcgaccgtcgcgggggcggagaacgccggagcggcgacttcacccaccgcaaggatcgc
ggcgaccgtcgcgagcagggcggcggcggattccgcggtcgcgactga
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