Rhodococcus coprophilus: NCTC10994_02919
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Entry
NCTC10994_02919 CDS
T06666
Symbol
alkA
Name
(GenBank) DNA-3-methyladenine glycosylase II
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
rcr
Rhodococcus coprophilus
Pathway
rcr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NCTC10994_02919 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rcr03000
]
NCTC10994_02919 (alkA)
03400 DNA repair and recombination proteins [BR:
rcr03400
]
NCTC10994_02919 (alkA)
Enzymes [BR:
rcr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
NCTC10994_02919 (alkA)
Transcription factors [BR:
rcr03000
]
Prokaryotic type
Helix-turn-helix
AraC family
NCTC10994_02919 (alkA)
DNA repair and recombination proteins [BR:
rcr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NCTC10994_02919 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
HhH-GPD
Motif
Other DBs
NCBI-ProteinID:
SQI34746
UniProt:
A0A2X4U4N6
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All DBs
Position
1:3144326..3145180
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AA seq
284 aa
AA seq
DB search
MATLRLPVALPFAVEPLLATLRRHAVPGHERHDAPVGAHCIAIRTSRGSAYAAAKLRPDA
EEVILRVDATHRSDIEEVEAAVRRWLDLDTDPALVDAAFASDAVLAPLVRARPGLRVLGS
TDWFTTAVGTVLGQQVSVGAAATFAGRLVAAFGDDAPGGLRCSPTPQRLVSLDQEELRAT
IGTTRSRARTVHELARAACDGLDPESASFGRDLLALPGIGPWTVDYLALRTGDPDAYPAG
DLVLRRALGAETTREATALAAQWRPWRAYAVAHLWAHATSDPAP
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgctccggctcccggtagcgctgccgttcgcggtggagcccttactggcgacg
ttgcgtcgacatgccgtgccgggacacgagcgtcacgatgcgccggtcggcgcccactgc
atcgcgatacgcacgtcgcgcggttcggcgtatgcggcagcgaaattgcgccccgatgca
gaagaggtgatccttcgcgtcgacgctacccacaggagcgacatcgaggaagtcgaagcg
gcagtgcggcgttggctcgatctcgacaccgatcccgcgctcgtcgacgccgcgttcgcg
tccgatgcggtcctcgccccgctggtacgggcgcggcccggactgcgagtcctggggagt
accgactggttcaccaccgccgtcggcacggtgctggggcagcaggtgagcgtcggggca
gccgctaccttcgcgggccgcctcgtcgcagccttcggcgacgacgcgccgggcgggttg
cgttgttctccgaccccgcaacgcctcgtgtctctcgatcaggaagaacttcgtgcgacg
atcggtaccacccgatcgcgcgcacgcacggtgcacgagttggcccgggccgcatgcgac
gggctggatccggagtcggcgtccttcggtcgggacctcctcgcactacccggaatcggc
ccgtggaccgtcgactacttggcgttgcgcaccggcgaccccgacgcttacccggccggc
gacctcgtgctgaggagggctctcggcgccgaaacgacgcgtgaagctaccgcgctcgcg
gcgcagtggcgaccctggcgcgcctacgcggtcgcgcatctgtgggcgcacgccacgtcg
gatccggcgccctga
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