Raphidiopsis curvata: NIES932_02500
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Entry
NIES932_02500 CDS
T09812
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
rcs
Raphidiopsis curvata
Pathway
rcs00061
Fatty acid biosynthesis
rcs00071
Fatty acid degradation
rcs01100
Metabolic pathways
rcs01212
Fatty acid metabolism
rcs02024
Quorum sensing
rcs04146
Peroxisome
Module
rcs_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
rcs00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
NIES932_02500
00071 Fatty acid degradation
NIES932_02500
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
NIES932_02500
09145 Cellular community - prokaryotes
02024 Quorum sensing
NIES932_02500
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
rcs01004
]
NIES932_02500
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rcs04147
]
NIES932_02500
Enzymes [BR:
rcs01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
NIES932_02500
Lipid biosynthesis proteins [BR:
rcs01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
NIES932_02500
Exosome [BR:
rcs04147
]
Exosomal proteins
Exosomal proteins of breast milk
NIES932_02500
Exosomal proteins of breast cancer cells
NIES932_02500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
BAZ88786
LinkDB
All DBs
Position
286028..288043
Genome browser
AA seq
671 aa
AA seq
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MQLQPPFLSTFTDREKKAIQDLTSYSGIHSLPEIWPLAAQHFRDITALYNPHSKPEVKIT
YTQLWDQIQRFAIGLQVLGVNKNDDAHPPRIALIADNSPRWFIADQGIMTAGAVNAVRSS
QAEKNELLYIISHSGSTVVVVEDVKTLNKLEPDLAELPIKLVILLSDETDMPEWNTLPIM
ETYSVMNFTQLLNLANDHTLTPATIGGDVLATLIYTSGTTGKPKGVMLSHNNLLHQVQTL
GTIVQPQPGDVALSILPTWHSYERSGEYFLLSQGCTQIYTNLRMIKEDLKRFKPNFMIAV
PRLWESIYEGVQKQFRSQPAKKQKLIQFLLKMGQEYIFARRIAQGLSLEHIGASEWIRWA
AKIKQLVLSPLQILGEKLVYAKVREATGGKIKQVISGGGALPRHIDNFFEMIGVEILQGY
GLTETSPVTNARRIWRNLRGSSGQPIAGTQVKIVHPETKDPLPPGKIGLVLLKGPQVMGG
YYQNLEATKQVIDNDGWFNSGDLGWVTPENDLVLTGRAKDTIVLSNGENIEPQPIEDACL
RSPYIDQIMLVGQDQRSLGALIVPNLDALEKWAEVENINLPTQDDSTENEDQKIGQKIDL
ENKIIQDLYRKELNREVQNRPGYRVDDRIGPFKLIPEPFSMENGMMTQTMKVRRHVVAEK
YGNTIDSMFVK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgcaacttcagcctccttttttatctacctttacagatcgagaaaaaaaggcaatacaa
gatttgactagttattctggtatccattccttaccagaaatatggccattagcagctcaa
cattttcgcgatatcactgctctatataacccccatagcaaaccagaggtcaaaatcacc
tacacccaattgtgggatcaaattcagcgttttgccataggtttacaggtcttgggggta
aacaaaaatgatgatgctcatcccccacgcattgctctgatagcagataatagtccccgt
tggtttatcgcagaccaaggtattatgactgctggagcagtgaatgcagttcgtagctcc
caagctgaaaagaatgagttactatatattatctcccacagtggtagtaccgttgtagta
gttgaagatgttaaaacgttaaataagctagaacctgatttggctgagctaccaattaag
ctggtcattttactttctgatgaaacggatatgcctgagtggaataccttgccgattatg
gaaacctattcggtgatgaattttactcagctgttaaatctggctaatgatcatacttta
actcctgcaacaattggtggagatgttttggcgacgttgatttacacttctggaactacg
ggtaaacccaagggtgttatgctttcccataacaacttattacatcaggttcaaaccctg
ggaactatagttcaaccccaacctggtgatgtggctttaagcattttaccaacctggcat
agttatgagcgcagtggagaatattttttgctttctcaaggttgtacacaaatatataca
aatttgagaatgattaaagaagacctaaaaaggtttaagcctaactttatgattgccgtg
cccagactgtgggagtcaatttatgaaggggtgcaaaagcagttccgtagccaaccagcg
aaaaaacaaaaactaattcaattcttgctgaaaatgggtcaagaatatattttcgctcga
cgtattgcccaaggattaagtttagagcatattggtgcttcagaatggataagatgggca
gcaaaaattaagcaattagtcttatcaccattacaaatattgggggaaaagttagtttat
gctaaagtgcgagaagctacaggaggaaaaatcaagcaggtgattagtggaggtggggca
ctgcctagacatatagataacttctttgaaatgatcggggtggagattttacagggttat
ggattgacggaaacttcaccggtgactaatgctcgtcgtatctggaggaatttacgtgga
tcctcgggacaaccaatagcaggaactcaggtgaagatagttcacccagaaacaaaagac
cctctacctccggggaaaattggcttagttctacttaaaggtccccaggtgatggggggc
tattatcagaatttggaagctacaaaacaggttattgacaatgatggttggtttaatagc
ggtgatttaggttgggtaacacctgaaaatgacttggtgctaactggtagagctaaggat
actattgtattaagcaatggtgaaaatattgaaccccaacctatagaagatgcttgcttg
cgatcgccctatattgaccaaattatgctggtaggacaagatcagcgcagtcttggtgct
ttaatagttcctaacctggatgctttggaaaaatgggcggaagttgagaatatcaattta
cctactcaggatgattccacggaaaatgaagatcaaaaaatcggtcaaaaaattgactta
gagaacaaaataattcaggatttatatcggaaggaattaaatagggaggtgcaaaatcgt
ccaggttatagggttgatgaccgcattggaccctttaagctaatcccggaacccttttcc
atggaaaatggcatgatgacccaaaccatgaaagttcgtcgtcatgttgtggcagaaaag
tatggcaatactattgacagcatgtttgtcaagtag
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