Raphidiopsis curvata: NIES932_05450
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Entry
NIES932_05450 CDS
T09812
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rcs
Raphidiopsis curvata
Pathway
rcs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rcs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NIES932_05450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcs03400
]
NIES932_05450
Enzymes [BR:
rcs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NIES932_05450
DNA repair and recombination proteins [BR:
rcs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NIES932_05450
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Mfd_cyano
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAZ89076
LinkDB
All DBs
Position
complement(570357..573875)
Genome browser
AA seq
1172 aa
AA seq
DB search
MTFSSIVRSLVRSPLTTELNNQLKKHQQLGLNGISRLPKNLIASALASQESRDLCIICAT
LEEAGRFYAQLEAMGWNAVHFYPTSEASPYQPFDPETELSWGQMQVLADLVSNSDHKSMA
IITTIGALQPHLPPRETFKSFCLTLQKGMGYSLEQFGEKITALGYERVSLVETEGQWSKR
GDIVDVFPVACELPVRLEWFGDDIEKIREFDPSTQRSALDKVNQITLTPTSFAPIVLSAL
KDNGPFWQFSSQLDLNSEVIENSGLEGSRRFLGFAFDQPASILDYLPANTLVAIDEIEQC
HAHGDRWVENADEQWLLINDQLSTTFPKIHINFEECLAEKVSNFSTLYLSEIAEENSGTV
TYKDASQQTSSQGFVPSYNLAGRPLPIHPHQFAKLADTIRQQRDHKFAVWIISAQPSRSV
ALLQEHDCPAQFIPNPRDYQAIDKLQINQTPVALKYSGLAELEGVILPSYRLVIITDREF
YGQHALANFGYVRKRRKAASKQVDPNKLRAGDFVVHRSHGIGKFVKLESLTINDETRDYL
VIQYADGVLRVAADQVGSLSRFRTNLDRSPQLHKMTGKAWDNTKNKVKKAIKKLAVDLLQ
LYAARSQQEGFSYPQDMPWQEEMEDSFPYQPTIDQLKAVQDVKRDMESPRPMDRLVCGDV
GFGKTEVAIRAIFKAVTAGKQVALLAPTTILTQQHYHTIKERFAPYPIHVGLLNRFRSPE
EKRNIQKRLLTGELDIVVGTHQLLGKGVQFKDLGLLVIDEEQRFGVNQKEKIKTLKTHLD
VLTLSATPIPRTLYMSLSGIREMSLITTPPPTRRPIQTHLAPLNPQIVSSAIRQELDRGG
QVFYVVPRVEGIEETTTRLREMIPSGRFVIAHGQMDESQLESTMLTFSNHEADILVCTTI
IESGLDIPRVNTILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRELSDAARQRL
RAIQEFTQLGSGYQLAMRDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQE
IPKVDDTQIDLNLTAFIPATYITDIDQKISAYRAVATAKSKEELRAIAAEWNDRYGIVPP
PANQMLRVMELKQLAKNLGFSRIKPENKQHIVLETPMEEPAWNLLAQRLTENMRNRFVYS
PGKVTARGLAIFKAEQQLETLIDVFGKMQGVK
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgactttttcttctattgtacgtagtttggtgcgatcgcctctgaccacggaactcaac
aatcaactcaaaaaacaccagcaattgggtttaaatggcatttctcgcctacccaaaaat
ctcatcgcttctgctcttgctagccaagagagtcgtgacttgtgtattatctgtgccaca
ttagaggaagctggaagattctatgcccagttagaagctatgggatggaatgctgtgcac
ttttacccaacctcggaagcttctccctatcaaccttttgatccagaaacggagttaagt
tggggtcaaatgcaggtattagcggatttagttagtaatagtgatcataagagtatggct
attattaccactataggagcattacaaccacacttaccacctcgggaaacatttaaatcc
ttctgtttgaccttacaaaagggtatgggatatagtttagaacaatttggggaaaaaatc
actgctttgggatacgagcgggtttccctagtggaaacagaaggtcaatggagtaaacgg
ggtgacattgtggatgtatttcccgttgcttgtgagttaccggtgcgtttggaatggttt
ggggatgacattgaaaaaatccgtgaatttgaccctagtacccagcgctcagcgttagac
aaagtcaatcaaattaccttgacccccaccagttttgcaccgattgttttatctgcttta
aaagataatggtccattttggcaatttagttcccaactggatttaaattcagaagtaata
gaaaattcagggttagaaggtagtagaagattcctgggttttgccttcgaccaacccgcg
tcaattctagattatttaccagcaaataccttagtagcaattgatgaaattgaacaatgt
catgcccatggcgatcgctgggtagaaaatgcggatgagcaatggttactaattaacgat
caattatctaccaccttcccgaaaatacatataaattttgaggaatgtttagcggaaaaa
gtcagcaattttagtaccctatatttatcggaaatagcagaagaaaatagtggtactgta
acctacaaagatgccagccagcaaaccagttctcagggttttgttcccagctataattta
gcgggtagacccttacccatccatccccatcaatttgcgaaattagcagacaccatccgc
cagcaaagagaccataaatttgcggtttggattatttctgcccaaccttctcgttcagtt
gctctattacaagaacatgattgtccagctcagtttattcccaatccccgagattatcaa
gccattgataaactgcaaattaatcaaacaccagttgctctaaaatattctggtttagcg
gaattagaaggagtaattttaccttcttaccgtttagtaattattacagatcgggaattt
tatggtcaacacgccctagctaactttggctatgtgcgtaaacgacgtaaagcagcatcc
aaacaggttgatcctaacaaattaagggcgggtgattttgtcgtacatcgtagccatgga
atcggcaaatttgtcaaattagaaagtttaacaatcaatgacgaaacccgcgattattta
gtcattcaatatgctgatggcgtgttgagagtagcagcagatcaagtaggttccctttcc
agatttagaaccaacttagatagatcgccccaactacataaaatgaccggtaaagcttgg
gataacaccaagaataaagtcaaaaaagccattaaaaaattagcagttgatctgctgcaa
ttatatgcagctcgttcccagcaagagggtttttcctatccacaagatatgccttggcaa
gaagaaatggaagattcctttccttaccaacccaccatagatcaattaaaagcagtacaa
gatgtgaagagagatatggaaagtcccagacccatggatcgcctagtttgtggtgacgtg
ggttttggtaaaacagaagtagcaattagggcaatttttaaagctgttaccgcaggtaaa
caagtagcacttttagctcccaccaccattttaacccagcaacattatcacaccataaaa
gaacgttttgcaccctatcccattcatgtaggattattaaatcgttttcgttctccggaa
gagaaacgcaatattcaaaaacgactattaaccggtgagttagatatagttgtgggaact
catcaattgttaggtaaaggagtgcaatttaaagacttaggattattagtaattgatgaa
gagcagagatttggagtcaatcaaaaagaaaaaatcaaaactttaaaaacacacctagac
gtattgaccctatcagcaacacccattcccagaaccttatatatgtccctatctgggatt
agagaaatgagtttaattaccactccacctccgaccagaagaccgattcaaacccactta
gccccattaaacccccaaattgtcagtagtgccattagacaggaattggatagaggtgga
caagtgttttacgttgtccccagagttgagggtatagaagaaaccacaaccagactccga
gaaatgattcccagcggtagatttgtcatagcccatggtcaaatggatgaaagtcagcta
gaatcaaccatgttaacttttagtaaccatgaagcagacattttagtatgtacaacaatc
attgaatctggattagatattccgcgagttaataccattttaattgaagatgctcaccga
tttggactttcccaattatatcaactaaggggaagagtaggaagagcaggaattcaagcc
catgcttggttattttatcctaaacaaagagaactatccgatgctgctagacaaagatta
agagccattcaagaatttacccaactaggttctggttatcaattagccatgcgggatatg
gaaattcgtggggtaggaaatttattaggtgcggaacaatcaggtcaaatggatgccatt
ggatttgacttatatatggaaatgttagaggaagcaattagggagattaggggtcaagaa
atacccaaggttgatgacacccaaattgatttaaacctgaccgcatttattcctgcaacc
tatattaccgatattgatcaaaaaataagtgcctatcgtgcggtagcgacagccaaatcc
aaggaagaattaagagcaatagcagcagaatggaatgatagatatggtattgtacccccc
ccagcaaatcaaatgctcagagttatggaattaaaacaactggcaaaaaatctaggtttt
agtaggattaaaccagagaataagcaacatatagtattggagacaccaatggaagaaccc
gcttggaacttattggcccagaggttgacggaaaatatgagaaatcggtttgtatattct
cctgggaaggttacagctaggggtttagctatatttaaggccgaacaacagttggaaacc
ctaatagatgttttcggcaaaatgcaaggtgttaagtag
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