Raphidiopsis curvata: NIES932_05810
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Entry
NIES932_05810 CDS
T09812
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rcs
Raphidiopsis curvata
Pathway
rcs03410
Base excision repair
rcs03430
Mismatch repair
rcs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rcs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NIES932_05810
03430 Mismatch repair
NIES932_05810
03440 Homologous recombination
NIES932_05810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcs03400
]
NIES932_05810
DNA repair and recombination proteins [BR:
rcs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NIES932_05810
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NIES932_05810
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NIES932_05810
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BAZ89112
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Position
613205..615028
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AA seq
607 aa
AA seq
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MTLQKNNIKLPYQRWHIAKQNEELAEKLASVNNVSPIIGQLLINRGMETPEIATRFINPE
CINLPSPLDEFPDLVTSVELLASAIRNHEKIAICGDYDADGMTSTALLLRSLGSLGANID
YAIPSRMHEGYGINKRIVEEFHSEGVSLILTVDNGIAAFEPIARAKELGLKVIITDHHDL
PPQLPVADAILNPKLISPSSPYRGLAGVGVAYVLAVCLAQHLGKLTGLVQPMLDLFTLGT
IADLAPLTGVNRRWIKRGLKSLYKSNLPGIQALIQVSGVQPSMGENQQVSKAQNSKSLKP
EDIGFRLGPRINAVGRIGNPQIVIELLTTDDMGIALERAMQCEQINAERQKICEEIQGEA
ILLVEDLYAQNLHQDRVLVVVKDNWHHGVIGIVASRLVERYGVPVFIGTYENNDLVRGSA
RGIPEFNVFEALEFTRDLLYKYGGHKAAAGFSLPAANLENFRLRLSEFANQCLEVQHLKP
LLRIDGQINLCQVNRDLFQQLNILHPCGIENPDPIFWTPQVRVVEQQMIGKGSIKLTLAQ
IIDNIRYEIRALAWRWGDYFPLPFTIDIAYKLRENNFNGANDIELELVGVRLPQQYHQSC
NYSFDGN
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgactctacagaagaataatataaaactaccatatcaacgctggcacatagcaaagcaa
aatgaagaattagctgaaaagttagcaagtgtcaataatgtttctcctattataggtcag
ttgttaattaatagaggtatggaaacaccagaaatagctactagatttatcaatcctgaa
tgtataaatttaccctctcccttggacgagttccccgatttagttaccagtgtggaatta
ttggcaagtgctattaggaaccatgagaaaattgctatctgcggcgattatgatgctgat
ggtatgactagtacagccttgctgttacgcagcttgggatctttaggtgcaaacattgac
tatgctattcccagtaggatgcatgagggttatggaatcaataaacgaattgtggaagaa
tttcacagtgaaggggtcagtttaattctaactgtagataatggtattgctgcttttgag
cctattgcaagagcaaaagagttgggtttgaaagtgattattacagatcaccatgattta
cctccccaattaccagttgctgatgcaattcttaaccccaaattaatatctccatcttct
ccttatagaggtcttgctggtgtgggtgtagcctatgttttagctgtatgtttagctcaa
catttgggaaaactcacaggtctagttcaacctatgttggatttatttactttgggaact
attgctgatctagctcctttaactggtgttaatcgtcgttggataaaacggggtttaaaa
tcattatataagtctaacttacccggtattcaggctttaattcaagtctctggtgtacaa
ccgagtatgggagaaaatcagcaagtatctaaggcacaaaattctaagtctttaaaacca
gaagatattggatttcgtctaggaccaagaatcaatgctgtgggtagaattggcaatcct
caaattgtgatcgaattactaactacggatgatatgggaattgctctagaacgagcaatg
caatgtgagcaaataaatgctgaacgtcaaaaaatctgtgaggaaatccaaggagaggca
atattgttggttgaagatttgtatgcacaaaatttgcatcaagaccgagttctggtggtg
gtcaaagataattggcatcatggtgtaattggtattgtcgcttctcgtctggtagaacgt
tatggagttcccgtctttatcggtacttacgaaaataatgacctggttcgtggttctgct
cgaggaatacctgaattcaatgtgtttgaagctctggagtttaccagggatttactatat
aaatatggtgggcacaaagcagctgctggattttctttacccgcagctaatctagaaaat
ttccggttgcgtttatcagagtttgccaatcaatgtctggaagttcaacatctcaaacca
ctattaagaatagatggtcaaatcaatctttgtcaagtcaatcgggatttattccaacag
ttgaatattcttcatccctgtggaattgaaaaccctgaccctatcttttggactccccaa
gtacgagtggtagaacagcaaatgattggtaagggtagtattaagttgactttggctcaa
atcatagataatataagatatgaaattagagctttggcttggcgatggggtgattatttc
cctttacccttcactattgatattgcttataagttgcgggaaaataactttaatggtgcg
aatgatattgagttggaattagtcggtgtcaggttacctcaacagtatcatcaaagctgc
aattacagctttgacggaaactag
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