Raphidiopsis curvata: NIES932_07310
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Entry
NIES932_07310 CDS
T09812
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rcs
Raphidiopsis curvata
Pathway
rcs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES932_07310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcs03019
]
NIES932_07310
03009 Ribosome biogenesis [BR:
rcs03009
]
NIES932_07310
Enzymes [BR:
rcs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NIES932_07310
Messenger RNA biogenesis [BR:
rcs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NIES932_07310
Ribosome biogenesis [BR:
rcs03009
]
Prokaryotic type
rRNA helicases
NIES932_07310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
HEM4
AAA_19
Motif
Other DBs
NCBI-ProteinID:
BAZ89256
LinkDB
All DBs
Position
complement(773164..774657)
Genome browser
AA seq
497 aa
AA seq
DB search
MSSITFQELGISPERATHLENMGFTTPTNIQTQAIPQLLAGRDVVGQSQTGTGKTAAFSL
PILERLDPNKRAVQALVLTPTRELAMQVHDAISQFMGDSELRVLAIYGGQSIDRQMIQLK
RGVHVVVGTPGRVIDLLERGSLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPQDRQT
ALFSATMPPSIRQLVNKFLNSPVTVTVEQPKATPTKINQVAYLIPRHWTKAKALQPILEM
EDPETALIFVRTRRTAAELTNQLQSAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVVAT
DIAARGLDVDLLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQAFER
HNRQNWQVLSIPTRAQIEAKHIQKLKEQVSEALAGERLASFLPIISELTEKYDAQAIAAA
ALQLAYDQTRPAWLQNGVDIPVEEPTPKPKINKRRESSDGNGVGRSRSWSKSDYGDDSKP
TPKPKLRRRETSVSPSN
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtattacttttcaagaactaggcatttccccagaacgtgcgacccacttagaa
aacatggggtttaccacaccgaccaacatccagacccaagctattccccaattattggcg
ggaagggacgtagtaggtcagtctcagactggtacaggtaaaacagcggctttttccctg
cctatattagagagactagatcctaacaagagagcagtacaggctttagtgttaactccc
actcgtgaattagcaatgcaagttcatgatgccatttcccagtttatgggtgatagtgag
ctgcgagtattagccatttatggtggtcaatccattgaccgacaaatgatccaattaaaa
cggggcgtacatgtagtagtggggacaccaggaagggtaattgacctcttggaacgaggt
agtttaaaacttgaccaagtgaaatggtttgttttagacgaagcggacgaaatgttaagc
atgggatttattgatgatgtgatcaaaattctctcccaagcaccccaggatcgtcaaact
gcgcttttttcagctaccatgcccccctctattcgccaattggtgaataagtttctcaat
tctcccgtcacagtaaccgtggagcaacccaaagctacacctactaaaattaatcaagta
gcctatttaatacccagacactggactaaggctaaagccctacaaccaattctggagatg
gaagatccggaaacagccttgattttcgtgcgtactcgtcgtactgctgcggagctgaca
aatcaattgcagtccgctggtcacagtgtagatgaataccacggagatttgtctcaacaa
gctagggaaagattattaacccggttccgcaatcgtcaagtacgatgggtagtagcaaca
gatattgctgcgcgggggttagatgttgacctactttcccacgtgattaacttcgaccta
ccagatagcgtagaaacctacgtgcaccggattgggagaacgggacgtgctggtaaagaa
ggaacagcaatatcactggttcaaccctttgaaagaagaaagcagcaggcttttgaacgt
cataatcgccaaaactggcaagtattgtcaattcctaccagagcccaaatcgaagctaaa
cacattcagaagttgaaagagcaggtttccgaagctctcgctggcgaaagattagcctcc
ttccttcctatcattagtgaattgacggaaaaatatgatgcccaagctattgcagcggca
gctttacaattggcttatgaccaaacccgtcctgcttggttacaaaatggagtagatatt
cctgtggaagagcctacacccaagccaaaaatcaacaaacgacgtgagagtagtgatggt
aatggagtaggtcgtagtcgttcttggtctaaatctgattatggcgatgacagcaaaccc
acacccaaacccaaattgagacgtcgggaaacatcggtcagtcccagtaattaa
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