Raphidiopsis curvata: NIES932_13100
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Entry
NIES932_13100 CDS
T09812
Symbol
rpoC1
Name
(GenBank) RNA polymerase gamma subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rcs
Raphidiopsis curvata
Pathway
rcs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rcs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NIES932_13100 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcs03021
]
NIES932_13100 (rpoC1)
03400 DNA repair and recombination proteins [BR:
rcs03400
]
NIES932_13100 (rpoC1)
Enzymes [BR:
rcs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NIES932_13100 (rpoC1)
Transcription machinery [BR:
rcs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NIES932_13100 (rpoC1)
DNA repair and recombination proteins [BR:
rcs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NIES932_13100 (rpoC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
BAZ89827
LinkDB
All DBs
Position
complement(1372987..1374864)
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AA seq
625 aa
AA seq
DB search
MRSVQSNQFDYVKIGIASPERIRAWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCE
RIFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGFIKLAAPVAHVWYLKG
IPSYIAILLDMPLRDVEQIVYFNSYVVLAPGNADTLVYKQLLTEDQWLEIEDKIYSEDSQ
LVGVEVGIGAEALLRLLSGINLEEEAEKLRGEIESAKGQKRAKLIKRLRVIDNFIATGSQ
PEWMVMSAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVR
NEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRS
VIVVGPKLQIHQCGLPREMAIELFQPFVINRLIRSGIVNNIKAAKKLISRNDPSVWDVLE
EVIEGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
LESQAEARLLMLASNNILSPATGKPIVTPSQDMVLGAYYLTAENPNATKGAGKYFASLDD
VIMAYQQDQVELHAYIYVRFDGDVQTGQPDNEPLEVTENEDGSRTVLYKFRRVREDAQGN
LISQYIYTTPGRVIYNKAIQDALAS
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgcgctctgttcaatctaatcaatttgattacgttaaaattggcattgcttcaccagaa
cgtatccgcgcttggggggaacgtaccttacctaatggtcaggtggttggtgaggtgaca
aaacctgaaaccattaactaccgtaccctcaagccagaaatggatggtttgttttgcgag
cggatctttggccctgctaaggattgggaatgtcactgtggtaaatataaacgggttcgt
catagaggtattgtctgtgagcgctgtggagtggaggtaacggaatcacgagttcgccgc
catagaatgggcttcattaagttagcagcacctgtagcccatgtttggtatctcaaaggc
attcctagttatattgccatactattagacatgcccctacgagatgttgaacaaatcgtc
tactttaactcctatgtagttttagctcctggtaatgctgacacactcgtttataagcag
ttattaacagaagaccaatggttagagattgaggataaaatttacagtgaagattctcaa
ttagtaggggtagaagtaggaattggtgcggaggctttactacgtttattatcaggtatt
aatttagaagaagaagcagaaaaactgcggggggaaattgaatcagcaaagggacaaaaa
cgtgctaaattgattaaacgtctgcgggtaattgacaatttcattgccactggttcccaa
ccggaatggatggtgatgtcagccattccagtcattccacccgatctccgtcccatggta
caactagacggtggtagatttgctaccagcgatttaaacgacctctaccgtcgggtaatc
aatcgcaataatcgtttagctagactacaggaaatcctggccccggaaatcattgtccgc
aatgaaaaacgcatgttacaggaagcagtagatgctttaattgacaatggtcggagagga
cgtacggtggtaggagccaataaccgtcccttaaagtccctatcagatatcatagaaggt
aaacaggggcgattccggcaaaacctcctgggtaaaagagtagactactcaggacgttcc
gttattgtagttggtcccaaattgcaaattcaccagtgtgggctccccagggaaatggcc
atagaattgtttcagccatttgtgattaaccgtttaattagatcgggaatagttaacaat
attaaagcagccaaaaagctcatttctcgtaatgaccccagtgtttgggatgttttggaa
gaagtcatagaagggcacccggttatgttaaaccgcgctcctacactgcatagactggga
attcaggcttttgaacccatattagtagagggaagagcgatacagttacatcctcttgtt
tgtccggcattcaatgctgactttgatggagatcagatggctgttcacgttcccttatct
ttagaaagccaagcggaagcaagactgttaatgttagcatccaacaacattctttcacct
gctacgggtaaacctatcgtcacacccagccaagatatggttttaggagcctattacctc
actgctgaaaatcccaatgctaccaagggagcaggcaaatactttgcctccctagacgat
gtaattatggcatatcaacaagatcaagtggaactacatgcatatatttatgttcgattc
gatggcgatgtgcaaacaggacaaccagataacgaacccttggaagtcacagaaaacgaa
gatggcagccgtactgtcttgtataaattccgtcgagtgcgagaagatgcccaagggaat
ttaatttcccaatatatttatacaacccctggcagagtgatttataacaaagcaattcaa
gatgctttagccagctaa
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