KEGG   Rhizobium croatiense: PYR68_06400
Entry
PYR68_06400       CDS       T09286                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
rct  Rhizobium croatiense
Pathway
rct03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rct00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PYR68_06400
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rct03019]
    PYR68_06400
Messenger RNA biogenesis [BR:rct03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     PYR68_06400
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B_2 RMMBL Lactamase_B Lactamase_B_3 Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: WET75135
LinkDB
Position
1289571..1291241
AA seq 556 aa
MAKQDELVFLPLGGVGEIGMNLALYGYGPPEHRQWIMVDCGVTFPGPDLPGVDLVLPDIR
FLASERKNLKAIIITHAHEDHYGALADLWPGLNVPVYASGFTAGLLEAKRNFEKARIGEV
PVTPFKAGDTINVGPFSIEGVAVNHSIPEPMSLMIRTPAGNVIHTGDWKIDHEPSLGPLT
DETRFRQLGDEGVLALMCDSTNALRDGVSPSEKDVSESLRKIIEDAEGRVAITTFSSNVG
RIRTVAEAAEAAGREVLLLGSSLKRVVDVAQDIGLMEGVKPFISEEEYGYIPRDKVVVIL
TGSQGEARAALAKLSRDEMRNVAFAAGDIVVFSSRAIPGNEKAIQDIKNGLVEQGVHIIT
DTEALVHVSGHPRRNELQRMYEWTRPKVVVPVHGEATHLTAHKELAEQSGIAIVPRVRNG
DILRLAPGPVEVIGEAPHGRIYKDGMLIGDFDEMGIGERKKLSYVGHVAVSVVLDARYDI
VGDPDLVSIGLPVYDDEGDEMEDTLFDAAISAIESIPRARRKDIDMLQEAVRRAIRAAAN
QSWGKKPVVTAFVTKV
NT seq 1671 nt   +upstreamnt  +downstreamnt
atggcgaaacaggacgagttggtattcctgcctctgggcggcgttggcgagatcggcatg
aatctcgctctctatggctacggcccgcccgagcatcgccagtggatcatggtcgattgc
ggcgtcacctttcccggcccggatctgccgggcgtcgacctcgtcctgcccgacatccgc
ttcctcgccagcgaacgcaaaaacctcaaggcgatcatcatcacccatgcccatgaagat
cattatggcgcactcgccgatctctggcccgggctcaacgtgccggtctatgcctcgggc
tttaccgcgggtctgctcgaagccaagcgcaatttcgagaaggcgaggatcggcgaggtg
ccggtgacgccgttcaaggccggcgacacgatcaatgtcggcccgttcagcatcgaaggt
gtggccgtcaatcactcgatccccgagccgatgtcgctgatgatccgcacgccggccggc
aatgtcatccataccggcgactggaagatcgaccacgagccctcgctcgggccgctgacc
gatgagacgcgtttccgccagctcggcgacgaaggcgtgttggcgctgatgtgcgattcc
accaatgccttgcgtgacggtgtttcgccctccgagaaggatgtgtcagaaagcctgcgc
aagatcatcgaggatgccgaaggccgggtggcgatcaccaccttctcatcgaatgtcggg
cgcattcgcaccgttgccgaagctgccgaggcggcgggccgtgaagtgctgctgctcggc
agctcgctgaagcgggtcgtcgacgtcgcccaggatatcggcctgatggaaggcgtgaag
cccttcatctccgaggaagaatacggctacatcccccgcgacaaggtcgtcgtcatcctg
accggcagccagggcgaggcgcgggcagcgcttgccaagctttcccgcgacgaaatgcgc
aatgtggcctttgcggcaggcgatatcgtcgtcttttcctctcgcgccattcccggtaac
gagaaggcgatccaggacatcaagaacggcctcgtcgagcagggcgtgcacatcatcacc
gataccgaggcgctcgtccatgtttccggccatccccgccgcaacgaactgcagcggatg
tacgagtggactcgcccgaaggtggtcgtgccggtgcatggcgaggcgacgcatctgacg
gcgcacaaggagcttgccgagcaatccggcatcgcgatcgtcccgcgggtgcgcaacggc
gatatcctgcggctggcgccaggtccggtcgaggtgatcggcgaagcgccgcacggccgc
atctacaaggacggcatgctgatcggcgatttcgacgagatggggatcggcgagcgcaag
aaactctcctatgtcggccatgtcgcggtcagcgtcgtgctcgacgcccgttatgatatt
gtcggcgatcccgatctcgtctcgatcggcctgcctgtttatgatgacgagggcgacgag
atggaggatacgctcttcgacgcggcgatcagcgccatcgaaagcattccgcgcgcccgc
cgcaaggatatcgacatgctgcaggaggccgtgcgccgcgccatccgcgccgctgcgaac
cagagctggggcaagaagcccgtcgttaccgccttcgtcaccaaggtctga

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