Rhizobium croatiense: PYR68_06435
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Entry
PYR68_06435 CDS
T09286
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rct
Rhizobium croatiense
Pathway
rct03030
DNA replication
rct03430
Mismatch repair
rct03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PYR68_06435 (dnaE)
03430 Mismatch repair
PYR68_06435 (dnaE)
03440 Homologous recombination
PYR68_06435 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rct03032
]
PYR68_06435 (dnaE)
03400 DNA repair and recombination proteins [BR:
rct03400
]
PYR68_06435 (dnaE)
Enzymes [BR:
rct01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PYR68_06435 (dnaE)
DNA replication proteins [BR:
rct03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PYR68_06435 (dnaE)
DNA repair and recombination proteins [BR:
rct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PYR68_06435 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
Motif
Other DBs
NCBI-ProteinID:
WET75142
LinkDB
All DBs
Position
1297047..1300544
Genome browser
AA seq
1165 aa
AA seq
DB search
MADIVRASTGEAIGDTPGFIHLRVHSAYSLLEGALPLKKILYKAAGDNQPAIAITDTNNL
FVALEFSQKAMDDGLQPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATEAGYER
LVDLISRAYLGGESNQAVHVRSSWLEEAGTEGLIALTGALTGPVDGAIREGHPAQAEARL
LVLKRLFGDRLYVELQRHGTYDKRHEQKIVGLAYAHDLPLVATNEAFFPTRDDYDAHDAL
MAVAHNAIVSDDSRFRLTPDHYLKSRAEMAKLFADLPEALENTIEIAKRCSFVLKTRKPI
LPRFTGATDDAEEAERAEAGELRRQAVEGLDMRLSTLGMSPGYEEKDYRERLEFELSVIE
RMRFPGYFLIVADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLN
PERVSMPDFDIDFCQDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPY
GQVDKICKLVPNNPANPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTH
AAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDF
VAKRGISVDLAAIPLDDKKTYEMLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVA
LYRPGPMENIPTYNARKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLG
EADLLRRAMGKKIKAEMDQQRERFVDGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAA
YAIVSYQTAYMKAHYPVEFLAASMTLDMSNTEKINDFRQDAKRLGIEVIAPSVQTSFRHF
ETGDNRIYYALAALKGVGESAVDHIVEMRGDKPFAGIEDFCLRIDPRQVNRRVLESLIFA
GAFDCFGMDRAQLSAGLDRILGYAQRAQENKLSGQSDIFGSTLTSGPEKIALPPFSPWLA
SERLLKEFQVLGFYLTAHPLDSYSNILQKMRVQTFAEFSAAIKQGASNARLAGTVISKQE
RKTRTGNKMGIIVFSDSSGQFEAVLFSEMLNQYRDVLESGKSFVLTATGEERPEGIGLRI
QTIQSLEEKSLQMQKALRVYVRDSGPLKMVAGHLNAKGDGLVSFIVIKEEGKREVEVALP
EKYRITPEIAAALRAAPGVVDVELV
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggcggatatagtaagggcttcgacgggtgaggcgatcggcgacacgccgggcttcatt
cacctgagagtccattccgcctattcgcttctcgaaggcgcgttgccgctgaagaagatt
ctctacaaggcggccggagacaatcagccggccatcgccattaccgacaccaacaatctg
ttcgtcgccctcgaattctcgcagaaggcaatggacgacgggctgcagccgatcatcggt
tgccaggtctcgatcgacatggaagacgggctggagaccgaaaagcgcggcggccagcag
gcattggtcaagctgccgtcgatcgttcttctcgcagcgacggaggccggttacgaaagg
ctggtcgacctcatcagccgcgcctatctcggcggtgaatccaatcaggccgtccatgtc
cgatcctcctggctggaggaggcgggcacggaagggctgatcgccttgaccggcgccctg
acggggccggtcgatggggcgatcagggagggccatcccgcccaggccgaagcgcggctg
ctcgtgctgaagcgtctcttcggcgacaggctctatgtcgagctgcagcggcatggcacc
tacgacaagcggcacgagcagaagatcgtcgggctcgcctatgcccacgatctgccgctg
gtcgcgaccaacgaggccttctttccgacacgcgatgattacgacgcccatgatgcgctg
atggcggttgcccataatgccatcgtttccgacgacagccgctttcgcctgacgccggat
cactacctgaagagccgcgccgaaatggccaagctctttgccgatttgccggaagcgctg
gagaacacgatcgagatcgccaagcgctgctccttcgtattgaagacgcgcaaaccgatc
ctgccgcgtttcacgggtgcgaccgacgacgccgaggaggccgaacgcgccgaggcgggc
gaattgcgccgccaggcggtcgaagggctggacatgcggctttcgaccctcggcatgtcg
ccgggttatgaggaaaaggattatcgcgagcggctggaattcgagctcagcgtcatcgag
cgcatgcgctttcccggctacttcctgatcgttgccgacttcatcaaatgggcaaagcag
catgacattccggttgggcctggccgcggttcgggcgccggttcgctggtcgcctacgcg
ctgacgatcaccgacgtcgatcccttgcggttttcgctgctgttcgaacgcttcctcaat
ccggaacgcgtgtcgatgccggacttcgacatcgacttctgccaagaccgccgcgaagag
gtgatccgatacgtccaggccaagtacggccgcgaacaggtggcccagatcatcaccttc
ggttcgctgcaggcgcgcgcagcactccgcgacgtcggccgcgtgctggaaatgccctat
ggccaggtcgataagatctgcaaacttgtgccgaacaatccggccaacccgacgccgctc
tccaaggcaatcgaggaggagccgaagctgcaggaggaggcggcgaaggagccggtggtc
gcgcgcctgctcgatatcgctcagaagatcgaggggctttaccgccatgcctcgacccat
gccgccggtatcgtcatcggcgaccggccgctgtccaagctggtgccgatgtatcgcgat
ccgcgctccgacatgccggtcacccagttcaacatgaaatgggttgagcaggcgggtctg
gtcaaattcgacttcctcggcctgaagacactgaccgtcctgaaggtcgccgtcgatttc
gtcgccaagcgcggcatcagtgtcgaccttgcggccattcccttggacgacaagaagacc
tacgagatgctctcacgcggcgagacggtcggcgtgttccaagtggaaagtgccggcatg
cgcaaggcgctgatcggcatgaggccggactgcatcgaggacattatcgcgctggtggcg
ctttatcgtccgggcccgatggagaacatcccgacctacaacgcccgcaagcacggtgac
gaagagctggaatcgatccatccgatgatcgaccacctgctcaaggaaacccaaggggtc
atcgtctatcaggaacaggtgatgcagatcgcccaggtcctgtccggttattcgctcgga
gaagccgatcttttgcgccgcgccatgggtaagaagatcaaggccgagatggaccagcag
cgcgaacgcttcgtcgatggcgccgtcaagaacggcgtctcgaagccgcaagccgacaat
atcttcgaactgctggcgaagttcgccaattacggcttcaacaagtcgcatgccgccgcc
tatgccatcgtctcctaccagacggcatatatgaaggcgcattatccggtcgaattcctc
gccgcctcgatgacgctcgacatgtccaacaccgaaaagatcaacgacttccgccaggac
gccaagcgccttggcatcgaggtgatcgccccgtcggtgcagacttccttccgccatttc
gaaaccggcgacaaccgcatctattatgcgctggccgctctcaagggcgtcggcgaatcc
gccgtcgaccatatcgtcgagatgcgtggcgacaagccctttgccggcatcgaggatttc
tgcctgcgcatcgatccgcgccaggtcaaccgccgtgtgctcgaaagcctgatctttgcc
ggtgccttcgattgtttcggcatggatcgcgcccagctttcggccggcctcgaccgtatc
cttggttacgcccagcgtgcccaggagaataagctgagcggccagtcggatattttcggc
agcacgctgacctcggggcccgagaagattgccctgccgccgttttcgccctggcttgct
tcggagcggctgctcaaggaattccaggtactgggcttctatctgaccgcccacccgctc
gattcctacagcaatatcctgcagaagatgcgggtacagacctttgccgaattttccgca
gcgatcaaacagggcgcgtccaatgcgcgccttgccggcaccgtcatctccaagcaggag
cgcaagacccgcaccggcaacaagatgggcatcatcgtcttctccgattcttcgggtcag
ttcgaagcggtgctgttttcggaaatgctgaaccagtatcgcgacgtgctagagtcggga
aaatccttcgtgctgaccgcgacgggcgaggagcggccggagggcatcggcctgcgcatc
cagacgatccagtcgctggaggagaagtcgctgcagatgcagaaggcgctgcgcgtctat
gtccgcgattccggaccgctgaaaatggttgccggccatttgaacgccaagggcgacggc
ctggtttccttcatcgtcatcaaggaagagggcaagcgcgaggtcgaagtggcgctgccg
gagaaataccgcatcaccccggagatcgccgcggctcttcgcgctgcccccggcgtcgtc
gacgtcgagcttgtgtga
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