Rhizobium croatiense: PYR68_06655
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Entry
PYR68_06655 CDS
T09286
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rct
Rhizobium croatiense
Pathway
rct03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rct00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PYR68_06655 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rct03021
]
PYR68_06655 (rpoC)
03400 DNA repair and recombination proteins [BR:
rct03400
]
PYR68_06655 (rpoC)
Enzymes [BR:
rct01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PYR68_06655 (rpoC)
Transcription machinery [BR:
rct03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PYR68_06655 (rpoC)
DNA repair and recombination proteins [BR:
rct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PYR68_06655 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WET75179
LinkDB
All DBs
Position
1346547..1350755
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNPQVPAQNFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTALKEHQLLSEEEYMLAVDEYGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRSELADTTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSILNQNEPGEGMAFSDLGELHHALE
SKVVTLHTKIRGRFKSVDEDGKPYSKIYETTPGRLLIGELLPKNGKVPFDICNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFSHACRAGISFGKDDMVIPDAKAKIVADTESL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDENTGRQKPMNSIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVTHVDCGTETGLTMTAIVDAGQVVASLGARILGRT
ALDDIDHPITGERIVDAGKMILEPDVIEIEKAGIQSIRIRSALTCEIQTGVCSVCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQIKNRN
LLRNSEGSLVAMGRNMTVQILDERGVERSSQRVAYGSKLHVDEGDKVKRGQRLAEWDPYT
RPMMTEVAGTVQFEDLVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIVIKDASG
NVAKLSRGGDARFLLSVDAILSVEPGTKVSQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRLGRDYKNKRRVIIEPAEDGVEPVEYLIPKGKPFHLQDGDYIE
KGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSTYIVGDNVDRIELEDVNDHLIEQGKKPAHGDPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDGLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRDELILEERRK
GTGAAVATPMLQDMAEKAPAAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatccgcaggtgcctgcacagaatttcgattcc
attcggatttcgatcgcgtctccggagaagatcctctcctggtcctacggtgagatcaag
aagccggaaaccatcaactaccgcacgttcaagccggaacgcgacggtctgttctgcgcg
cgcatcttcgggccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtcacgctgtcgcgcgttcgccgt
gagcgcatgggccatatcgagctcgccgctcccgtcgcccacatctggttcctgaagtcg
ctgccgtcacgcatttcgacgctgctcgacatgacgctgaaggatgtcgagcgcgtcctc
tacttcgaaaactacattgtcaccgagccgggcctgaccgccctgaaggagcaccagctt
ctctcggaagaagagtacatgcttgccgtcgacgaatacggcgaagaccagttcaccgcg
atgatcggcgccgaggcgatctacgagatgctggcctcgatgaacctcgagaagatcgcc
ggcgacctgcgctccgagcttgccgacaccacgtcggatctcaagcagaagaagctgatg
aagcgcttgaagattgtcgagaacttcatggaatcgggcaaccgtccggaatggatgatc
atgaaggtcgttccggtcattccgccggacctgcgtccgctggttccgctcgacggcggc
cgtttcgcgacgtcggatctgaacgatctctatcgccgtgtcatcaaccgcaacaaccgt
ctgaagcgcctgatcgagcttcgtgcgccgggcatcatcatccgcaacgaaaagcgcatg
ctgcaggaatcggttgacgcgttgttcgacaacggtcgccgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttc
cgccagaacttgctcggcaagcgcgtcgactattccggccgttcggtcatcgtcaccggt
ccggaactgaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactcttcaag
ccgttcatctatgcccgcctcgacgccaagggttactcctcgaccgtcaagcaggccaag
aagctggtcgaaaaggaaaagccggaagtctgggatatcctcgacgaggtcatccgcgag
catccggttctcttgaaccgcgcaccgacgctgcaccgcctgggcatccaggccttcgaa
cctaccctggtcgagggcaaggcgatccagctgcatccgctcgtctgcacggcgttcaac
gccgacttcgatggtgaccagatggccgttcacgtgccgctgtcgctcgaagcccagctc
gaagcccgcgtgctgatgatgtcgaccaacaacatcctgcatccggccaacggcgcgccg
atcatcgttccctcgcaggacatggttctcggcctctactatctgtcgatcctcaatcag
aacgagccgggcgaaggcatggccttctccgatctcggcgagctgcatcacgccctcgaa
agcaaggtcgtgacgctgcacaccaagatccgcggccgcttcaagtcggtcgacgaggat
ggcaagccctactcgaagatctatgagacgacgcctggccgtctgctcatcggcgaactg
ctgccgaagaacggcaaggtgcccttcgatatctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgccattgcggccagaaggacacggtcatcttc
tgcgaccgcatcatgcagctcggcttctcccatgcctgccgcgccggcatttcgttcggc
aaggacgacatggtcattccggatgccaaggcaaagatcgttgccgacaccgaaagcctg
gtgaaggaatacgagcagcagtacaatgacggcctgatcacccagggcgagaagtacaac
aaggttgtcgatgcctggggcaaggccaccgaaaaggtcgccgaagagatgatggcccgc
attaaggcggtcgaattcgatgagaacaccggccgtcagaagccgatgaactcgatctac
atgatgagccactccggtgcccgtggttctccgaaccagatgcgccagctgggcggcatg
cgtggcctcatggccaagccgtcgggcgaaatcatcgagaccccgatcatctcgaacttc
aaggaaggcctgaccgtcaacgagtacttcaactcgacccacggcgcccgcaagggtctg
gcagacaccgccttgaagaccgcaaactccggttacctgacccgccgtctcgttgacgtc
gcgcaggattgcatcgtcacgcatgtcgattgcggcaccgaaaccggcctcaccatgacc
gccatcgtcgatgccggtcaggtcgtcgcctcgctcggcgcccgcatcctcggccgtacg
gcgctcgacgacatcgatcatccgatcacgggcgagcgtattgtcgatgccggcaagatg
atccttgagcctgatgtcatcgagatcgagaaggccggcatccagtcgatccggatccgc
tcggcgctgacctgcgaaatccagacgggcgtctgctcggtctgctacggccgcgacctg
gcccgtggtacgccggtcaacatgggcgaagccgtcggcgttatcgccgctcagtcgatc
ggtgagccgggcacccagctcaccatgcgtaccttccaccttggcggtacggcgaccgtg
gtcgaccagtcgttcctggaagcttcgtacgaaggtacggtgcagatcaagaaccgcaac
ctgctgcgcaactccgaaggcagcctcgttgccatgggccgcaacatgaccgttcagatt
ctggacgagcgtggtgtcgagcgctcctcgcagcgcgtcgcctacggttcgaagctgcac
gtcgatgaaggcgataaggtcaagcgcggtcagcgtctggccgagtgggatccgtatacc
cgcccgatgatgacggaagtggctggtacggttcagttcgaggatctcgtcgatggtctc
tccgttctcgaagcgaccgacgaatccaccggcatcaccaagcgtcaggtcatcgactgg
cgttcgaccccgcgcggttcggacctcaagccggcgatcgtcatcaaggacgccagcggc
aacgtcgccaagctgtcgcgcggcggtgacgcccgcttcctgctctcggtcgacgccatc
ctgtcggtcgagccgggcacgaaggtctcccagggtgacgttctcgcccgttcgccgctc
gaaagcgccaagaccaaggacatcaccggtggtctgccgcgtgttgccgaactcttcgaa
gcgcgccgtccgaaggatcacgccatcatcgctgagatcgatggtacgatccgcctcggc
cgcgactacaagaacaagcgtcgcgtcatcatcgagccggcggaagacggtgtcgagcct
gtcgaatacctgatcccgaagggcaagcccttccaccttcaggacggcgactatatcgaa
aagggtgactacatcctcgacggtaacccggctccgcacgacatccttgcgatcaagggc
gtggaggcactcgcttcctacctcgtcaacgaaatccaggaagtctatcgtctgcagggc
gttgtcatcaacgacaagcacatcgaggtgatcgtccgtcagatgctgcagaaggtggaa
atcaccgacgccggcgactcgacctatatcgtcggcgacaacgtcgaccggatcgagctc
gaggacgtcaacgaccacctgatcgagcagggcaagaagcctgcccatggcgatccggtt
ctgctcggcatcaccaaggcatcgctgcagaccccgtcgttcatctcggccgcatccttc
caggaaacgaccaaggtgctgacggaagcggcgatcgccggcaagaccgacggcctgcag
ggtctgaaggaaaacgtcatcgtcggccgcctcatcccggccggtaccggcggcaccatg
acccagatccgccgtatcgccacctcgcgcgacgagctgatcctcgaagagcgtcgcaag
ggcaccggcgcagccgttgccacgccgatgctgcaggacatggctgaaaaggctccggcc
gcggaataa
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integrated database retrieval system
