KEGG   Ricinus communis (castor bean): 107261415
Entry
107261415         CDS       T01087                                 
Name
(RefSeq) sm-like protein LSM5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
rcu  Ricinus communis (castor bean)
Pathway
rcu03018  RNA degradation
rcu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rcu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107261415
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107261415
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rcu03019]
    107261415
   03041 Spliceosome [BR:rcu03041]
    107261415
Messenger RNA biogenesis [BR:rcu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107261415
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     107261415
Spliceosome [BR:rcu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    107261415
SSDB
Motif
Pfam: LSM DUF7452 Ntox4
Other DBs
NCBI-GeneID: 107261415
NCBI-ProteinID: XP_015575945
LinkDB
Position
7:complement(24604581..24608395)
AA seq 87 aa
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
RITKLDQILLNGNNIAILVPGGSPDPE
NT seq 264 nt   +upstreamnt  +downstreamnt
atggctaacaatccctcccagcttctcccttcagagcttatagatcgctgcattgggtca
aaaatctgggtaattatgaaaggagataaggagcttgttggcactctaagaggatttgac
gtttatgtgaatatggtgcttgaagatgtcactgaatatgagatcactgctgaagggcgg
cggataacaaagcttgatcagattctactgaatgggaacaacattgccattctggttcct
ggtggttcccctgatccagaatga

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