Ricinus communis (castor bean): 107262575
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Entry
107262575 CDS
T01087
Name
(RefSeq) exopolygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu00040
Pentose and glucuronate interconversions
rcu01100
Metabolic pathways
Module
rcu_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107262575
Enzymes [BR:
rcu01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
107262575
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
107262575
NCBI-ProteinID:
XP_048229649
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Position
5:5971080..5972905
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AA seq
392 aa
AA seq
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MKSKLSILTIFVLLSISLKIRAEKVFDVKNFGATPSQKNDISKALLAAWKAACSTPGASR
ILIPHAKYALRDVLLEGPCKGSMVLQIKGTLMAPADPSEHHSQGWITFQHVDHLTISGGN
LDGRGKIAWGKNTCRTNVNCKNLPMNLRFDFVTNTIVEDLTSRDSKNFHMNLIGCQNFTL
QRIKIIAPGDSANTDGIHIGRSNGVNIIDSKIGTGDDCISIGDGSRNIKITGVRCGPGHG
ISIGSLGKYKNEEPVSGVYVKKCDLINTTNGIRIKSWPGLFSGTATDLHFEDISMNNVSN
AILIDQMYCPWNHCNSKASSNVKISKVTFSNIKGTSSTPTIVKLLCSKGLPCEGVELNNI
NVVYKGPEGPAKSECTNVKPKIGIRTDMLRGC
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgaaatctaaattgagtattttaacaatctttgtattgttatcaatttctttgaaaatt
agagcagaaaaggttttcgatgtgaaaaattttggtgctacacctagccaaaagaatgat
attagtaaggctctattagctgcttggaaggctgcttgttcaacaccaggtgcaagtaga
attttaattccacatgctaaatatgcattacgcgatgtacttttggaaggcccttgcaaa
ggttcaatggtacttcaaattaaaggaaccttaatggccccagcagaccctagtgagcac
catagccagggttggattactttccaacatgtcgatcatttaactatatctggaggtaat
ttggatggtcgaggaaaaattgcatggggaaaaaatacttgtcgtacgaatgtaaattgc
aagaatctcccaatgaatttaaggtttgattttgtcactaataccatcgttgaagattta
acttcccgggacagtaagaattttcacatgaatctcatcgggtgccaaaattttacactc
caacgtattaagattatagcgcctggtgatagtgctaatacagacggaattcacattgga
cgttctaatggagtaaacattattgattcaaagatcggcactggtgatgattgcatctct
attggtgatggcagtcggaatatcaaaatcacaggagtaagatgtggaccaggtcacggt
attagcatcggaagcttaggaaagtacaaaaatgaagaacctgttagtggagtttatgtt
aagaaatgcgatctcataaatactactaatggcataagaattaaatcttggccaggacta
ttcagtggcactgcaactgatctgcattttgaagatatttccatgaataacgtgagcaac
gctatcctcatagatcaaatgtactgtccttggaaccactgcaattccaaggcttcatca
aatgttaagatcagtaaggttactttctctaatataaagggcacttcttcaactcctacc
atcgttaaacttttatgcagtaaaggcttaccatgcgagggcgtggaactcaataatatt
aacgtcgtatataaaggccctgaaggtcctgcaaaatctgaatgtacaaatgtcaagcct
aaaatcgggatacgaacagatatgcttcgtggatgctaa
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