Ricinus communis (castor bean): 8258025
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Entry
8258025 CDS
T01087
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu00040
Pentose and glucuronate interconversions
rcu01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
8258025
Enzymes [BR:
rcu01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
8258025
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
PDGLE
DUF7342
Motif
Other DBs
NCBI-GeneID:
8258025
NCBI-ProteinID:
XP_048235128
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All DBs
Position
9:complement(5345275..5349866)
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AA seq
451 aa
AA seq
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MAMEVSNSKWFCLCTAVLVVMLVGVFATARNDGFSGFLRNIVETEHLESSNNSSMAASGE
EIEEWKNEHAVDDPEEVVAMVEMSIRNSTERRKLGYFSCGTGNPIDDCWRCDPNWQKNRK
RLADCGIGFGRNAIGGRDGRFYVVTDAGDDDPVNPKPGTLRHAVIQDEPLWIVFKRDMVI
QLKQELIMNSFKTIDGRGANVHIANGACITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPS
HYGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHLTHHNEVML
LGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPT
INSQGNRYNAPVNPFAKEVTKRVETPAGQWKNWNWRSEGDLLLNGAYFTPSGAGASASYA
RASSLGAKSSSMVGSITANAGALGCRRGRQC
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggcaatggaggtgtctaattctaaatggttttgtctttgcacggcagttcttgttgtt
atgctcgtcggagttttcgctactgcacggaacgacggcttctctggtttcttaaggaat
attgtagaaacagagcatttggagagctcaaacaactcatcaatggcagccagtggagaa
gaaattgaggaatggaaaaatgagcatgcagttgatgacccagaagaagttgttgccatg
gttgagatgagcatccgcaacagcaccgaaaggagaaagttaggatatttctcgtgcgga
accggcaatccaattgatgactgctggcgctgtgatcccaactggcagaaaaaccgcaag
agacttgctgattgtggtatcggttttggcagaaatgccattggaggtcgtgatggtcgt
ttctatgttgttactgatgctggcgatgatgatcctgttaacccaaagcctggaactttg
cgtcatgctgttatccaagatgagcccttgtggattgtgttcaaaagggatatggttatt
caactgaaacaggaacttattatgaacagcttcaagaccattgatggacgtggggccaac
gttcatattgctaatggagcatgcatcactatccaatttgttactaatgtcattattcat
ggtcttcacattcatgactgtaaacccactggtaatgctatggttagaagctcaccgagt
cattatggatggaggaccatggctgatggtgatgctatctctatttttggatcaagccat
atctgggtcgaccataattcactctctcattgtgctgacggccttgttgatgctgttatg
ggttctactgccattaccatctccaacaaccatcttacccatcataatgaggtgatgctg
ttgggccacagtgattcctacaccagagacaagcaaatgcaagtgaccattgcttacaac
catttcggagagggacttatccagagaatgccaagatgtaggcatgggtacttccatgtg
gtgaacaatgactatactcactgggaaatgtatgccattggtggaagtgctaaccccacc
atcaatagtcagggcaatagatataatgcaccagttaacccttttgctaaggaggtgaca
aagagagtggaaacacctgcaggccaatggaagaactggaattggagatcagaaggtgat
cttctgctaaatggcgcttatttcactccatcgggagctggagcttcagctagttatgct
cgtgcctcaagcttaggtgccaagtcgtcttcaatggttggatcaataactgctaatgct
ggtgctcttgggtgccgcaggggccgtcaatgctaa
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