Ricinus communis (castor bean): 8258212
Help
Entry
8258212 CDS
T01087
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
8258212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8258212
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
8258212
mRNA cycle factors
Common to processing body (P body) and stress granule
8258212
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
8258212
NCBI-ProteinID:
XP_002526042
UniProt:
B9SJ73
LinkDB
All DBs
Position
1:complement(33693560..33699649)
Genome browser
AA seq
982 aa
AA seq
DB search
MMIVQMDKMSAPSSRERAERLYEKNIELENKRRRSAQARIPSDPNAWQQMRENYEAIVLE
DHGFSEQHNIEYALWQLHYRRIEELRAHFSAALASANSNTSQGAKVPSRPDRVTKIRLQF
KTFLSEATGFYHDLILKIRAKYGLPLAYFSEDSDNRVVLEKDGKKFADMKKGLISCHRCL
IYLGDLARYKGLYGEGDSKTREYAAASSYYLQAASLWPSSGNPHNQLAILASYSGDELAA
VYRYFRSLAVDNPFTTARDNLILAFEKNRQSYTQLLGDTKGLAVKDSSGCLTNKGRGKGE
AKPASKDTNLEANGDTEKTSNVHEMYKSFCIRFVRLNGILFTRTSLETFAEVLSSVSSEF
CVLLSSGPEELNFGPDTVDHALFIVRLISILIFTIHNVKRESEGQTYAEIVQRAVLLQNA
FTAVFELMGHMLERFVQLRDPSSSYLLPGILVFMEWLACCPDVASGSDADEKQAAVRSNF
WNHCISFLNKILSFWSTSLDDNEDDTCFNNMSHYEEGETGNRIALWEDFELRGFLPILPA
QTILDFSRKHSYGGDGSKEKISRVKRILAAGKALSNIVKIGQQTVFYDSRMKKFVIGTGH
QISDDGLLTFDSALPKANDLLQEIQPEQTISMSVLQPNPQPYVEGDEEDEVIVFRPAVPE
KRNDVLSAEWTPLDGMKPSEDLSVADMKFYGGALDMRQQAAFDAGSQITVSSGVSTQQNL
QQPIQPHTSKWLMEEAVSLANSLKAVRFMENGHVAEHEFPKDLGMAHPPVRSVPIQQPAN
VNTSGMFYNQTKMLESVVPSNVDVITSGVLAESLAVKTSMALPAGMRKSPVSRPVRHLGP
PPGFSHVPPKQFNEPVSGSDLMSGNSLADDYSWLDGYQLSSSTKGSGLNTAANFTSQAMP
QYINSNNGLMGTVSFPFPGKQVPSVQFQTEKQNGWQNYQALEHLRVQQEQQLQQQLLNGN
QQFTPMPEQYHGKSIWSSRYLV
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgatgattgtgcagatggataagatgtctgctccttcatcaagggagcgtgcagaacgc
ctttatgaaaagaatattgagttggagaataagcgtcggaggtcagctcaggcaagaatt
ccatcggaccccaatgcctggcaacagatgcgtgagaactatgaagccatagttcttgag
gatcatggtttttctgagcagcacaacatagaatatgctctttggcagttgcattataga
cgcatcgaggaactaagggctcacttcagtgctgctctagcatctgccaactctaataca
tctcagggtgccaaagttccttctcggcctgaccgtgttacaaagataaggctgcagttt
aaaacatttctttcagaagcaactgggttttatcatgatttgatcctgaaaatcagagct
aagtatgggcttcccctggcatatttttctgaagattcagataatcgcgttgtcttggag
aaagatgggaaaaaatttgctgacatgaagaaaggtttgatctcttgtcatcgctgtttg
atatacttgggtgaccttgcaagatacaagggactatatggggagggtgattctaaaaca
cgcgagtatgcagcagcttcaagttactacttacaagctgcatctctttggccatcaagt
gggaacccccataatcagcttgctattttggcttcctattcgggagatgaattggcggca
gtgtatcgttattttaggagtctggcagttgataatccctttacgacagcaagagataac
ttgattcttgcttttgagaagaaccgtcaaagttacacccaactgctcggggatacaaaa
ggtctcgcagttaaggattcatctgggtgcttgaccaacaagggaagagggaaaggggaa
gcaaagcctgcatctaaagacaccaacttggaagccaatggtgacactgaaaagacatct
aatgtccatgagatgtataaatctttttgcattcgctttgtccgcctgaatggcattctt
ttcacacgcaccagcctggagacatttgctgaagtcctctcttctgtcagcagtgaattc
tgtgttcttctttcttctgggccagaagagttgaactttggtccagatactgtcgatcat
gcccttttcattgttcggcttatctctattcttatatttactatccacaatgttaaaaga
gagagtgaaggtcagacatatgcagaaattgtgcagcgtgctgttctgcttcagaatgca
tttactgcagtatttgagttgatgggacacatgttagagaggtttgtgcagctgcgagat
ccttcttctagttatctcttacctggcattctggtttttatggaatggttggcctgctgt
cctgatgttgcatcaggcagcgatgcagacgagaaacaggctgctgttagatcaaacttt
tggaaccattgcatatccttcttgaataagatcttgtcattttggtcgacgtcccttgat
gataatgaagatgacacatgctttaataacatgagccattatgaagaaggggaaactgga
aatcggattgctttgtgggaagattttgaattgagaggatttttaccgattctccctgct
caaaccattttggatttttcgaggaagcactcctatggaggtgatggcagcaaggagaaa
atatctagagttaaaaggattctggcagctgggaaggctctatcaaacatcgttaagatt
ggtcaacaaacagttttttatgattcaaggatgaagaagtttgtcataggcacggggcat
caaatttcagatgatggcttgttgacgtttgattctgctttgccaaaagctaatgaccta
ttgcaagaaattcagcctgaacaaacaattagcatgagtgtcctgcagcctaatccacag
ccatatgtggaaggggatgaagaggatgaagtcattgttttcagacctgcagtgccagag
aagcgaaatgatgtgcttagcgcggaatggaccccacttgatggcatgaaaccaagtgaa
gatttatctgtagctgatatgaaattttacggtggtgctcttgatatgcggcagcaggct
gcttttgatgcaggttctcaaattactgtatcctctggggttagcactcagcagaatcta
caacaaccaattcaaccacatacctcaaagtggttaatggaagaagctgtttcacttgca
aatagcttgaaagctgtcaggttcatggagaatgggcatgtagcagaacatgagtttcca
aaagatttaggcatggcccatcctcctgtacgttcagttcccattcaacaacctgcaaat
gttaatactagtggtatgttctataatcagacaaaaatgctggaaagtgtggttccatca
aacgttgatgtgataacatctggagttcttgctgaaagtttggctgtgaagacctcgatg
gctctgccagcaggcatgagaaaaagtccggttagtcgacctgtaaggcaccttgggcct
ccgccaggctttagtcatgttcctcctaagcaatttaatgaacctgtttctggttcagat
ttgatgagtgggaattcactagcagatgattatagctggttggatggctatcagttgtca
tcgtcaacaaaaggttctggactgaatactgcagctaatttcacttctcaagccatgcct
cagtacattaatagcaataatggcttgatggggacagtcagcttcccttttcccggaaaa
caggtaccgtcagttcagttccagacagaaaaacagaatggctggcagaactaccaggct
cttgagcatctaagagtacagcaagagcagcagctgcagcaacaactcttaaatggaaat
cagcagttcactccaatgcctgagcaatatcacggaaagtctatctggagtagtcgttat
cttgtgtga
DBGET
integrated database retrieval system