KEGG   Ricinus communis (castor bean): 8258212
Entry
8258212           CDS       T01087                                 
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
  KO
K14409  protein SMG7
Organism
rcu  Ricinus communis (castor bean)
Pathway
rcu03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rcu00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    8258212
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rcu03019]
    8258212
Messenger RNA biogenesis [BR:rcu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Other surveillance factors
     8258212
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     8258212
SSDB
Motif
Pfam: EST1_DNA_bind EST1
Other DBs
NCBI-GeneID: 8258212
NCBI-ProteinID: XP_002526042
UniProt: B9SJ73
LinkDB
Position
1:complement(33693560..33699649)
AA seq 982 aa
MMIVQMDKMSAPSSRERAERLYEKNIELENKRRRSAQARIPSDPNAWQQMRENYEAIVLE
DHGFSEQHNIEYALWQLHYRRIEELRAHFSAALASANSNTSQGAKVPSRPDRVTKIRLQF
KTFLSEATGFYHDLILKIRAKYGLPLAYFSEDSDNRVVLEKDGKKFADMKKGLISCHRCL
IYLGDLARYKGLYGEGDSKTREYAAASSYYLQAASLWPSSGNPHNQLAILASYSGDELAA
VYRYFRSLAVDNPFTTARDNLILAFEKNRQSYTQLLGDTKGLAVKDSSGCLTNKGRGKGE
AKPASKDTNLEANGDTEKTSNVHEMYKSFCIRFVRLNGILFTRTSLETFAEVLSSVSSEF
CVLLSSGPEELNFGPDTVDHALFIVRLISILIFTIHNVKRESEGQTYAEIVQRAVLLQNA
FTAVFELMGHMLERFVQLRDPSSSYLLPGILVFMEWLACCPDVASGSDADEKQAAVRSNF
WNHCISFLNKILSFWSTSLDDNEDDTCFNNMSHYEEGETGNRIALWEDFELRGFLPILPA
QTILDFSRKHSYGGDGSKEKISRVKRILAAGKALSNIVKIGQQTVFYDSRMKKFVIGTGH
QISDDGLLTFDSALPKANDLLQEIQPEQTISMSVLQPNPQPYVEGDEEDEVIVFRPAVPE
KRNDVLSAEWTPLDGMKPSEDLSVADMKFYGGALDMRQQAAFDAGSQITVSSGVSTQQNL
QQPIQPHTSKWLMEEAVSLANSLKAVRFMENGHVAEHEFPKDLGMAHPPVRSVPIQQPAN
VNTSGMFYNQTKMLESVVPSNVDVITSGVLAESLAVKTSMALPAGMRKSPVSRPVRHLGP
PPGFSHVPPKQFNEPVSGSDLMSGNSLADDYSWLDGYQLSSSTKGSGLNTAANFTSQAMP
QYINSNNGLMGTVSFPFPGKQVPSVQFQTEKQNGWQNYQALEHLRVQQEQQLQQQLLNGN
QQFTPMPEQYHGKSIWSSRYLV
NT seq 2949 nt   +upstreamnt  +downstreamnt
atgatgattgtgcagatggataagatgtctgctccttcatcaagggagcgtgcagaacgc
ctttatgaaaagaatattgagttggagaataagcgtcggaggtcagctcaggcaagaatt
ccatcggaccccaatgcctggcaacagatgcgtgagaactatgaagccatagttcttgag
gatcatggtttttctgagcagcacaacatagaatatgctctttggcagttgcattataga
cgcatcgaggaactaagggctcacttcagtgctgctctagcatctgccaactctaataca
tctcagggtgccaaagttccttctcggcctgaccgtgttacaaagataaggctgcagttt
aaaacatttctttcagaagcaactgggttttatcatgatttgatcctgaaaatcagagct
aagtatgggcttcccctggcatatttttctgaagattcagataatcgcgttgtcttggag
aaagatgggaaaaaatttgctgacatgaagaaaggtttgatctcttgtcatcgctgtttg
atatacttgggtgaccttgcaagatacaagggactatatggggagggtgattctaaaaca
cgcgagtatgcagcagcttcaagttactacttacaagctgcatctctttggccatcaagt
gggaacccccataatcagcttgctattttggcttcctattcgggagatgaattggcggca
gtgtatcgttattttaggagtctggcagttgataatccctttacgacagcaagagataac
ttgattcttgcttttgagaagaaccgtcaaagttacacccaactgctcggggatacaaaa
ggtctcgcagttaaggattcatctgggtgcttgaccaacaagggaagagggaaaggggaa
gcaaagcctgcatctaaagacaccaacttggaagccaatggtgacactgaaaagacatct
aatgtccatgagatgtataaatctttttgcattcgctttgtccgcctgaatggcattctt
ttcacacgcaccagcctggagacatttgctgaagtcctctcttctgtcagcagtgaattc
tgtgttcttctttcttctgggccagaagagttgaactttggtccagatactgtcgatcat
gcccttttcattgttcggcttatctctattcttatatttactatccacaatgttaaaaga
gagagtgaaggtcagacatatgcagaaattgtgcagcgtgctgttctgcttcagaatgca
tttactgcagtatttgagttgatgggacacatgttagagaggtttgtgcagctgcgagat
ccttcttctagttatctcttacctggcattctggtttttatggaatggttggcctgctgt
cctgatgttgcatcaggcagcgatgcagacgagaaacaggctgctgttagatcaaacttt
tggaaccattgcatatccttcttgaataagatcttgtcattttggtcgacgtcccttgat
gataatgaagatgacacatgctttaataacatgagccattatgaagaaggggaaactgga
aatcggattgctttgtgggaagattttgaattgagaggatttttaccgattctccctgct
caaaccattttggatttttcgaggaagcactcctatggaggtgatggcagcaaggagaaa
atatctagagttaaaaggattctggcagctgggaaggctctatcaaacatcgttaagatt
ggtcaacaaacagttttttatgattcaaggatgaagaagtttgtcataggcacggggcat
caaatttcagatgatggcttgttgacgtttgattctgctttgccaaaagctaatgaccta
ttgcaagaaattcagcctgaacaaacaattagcatgagtgtcctgcagcctaatccacag
ccatatgtggaaggggatgaagaggatgaagtcattgttttcagacctgcagtgccagag
aagcgaaatgatgtgcttagcgcggaatggaccccacttgatggcatgaaaccaagtgaa
gatttatctgtagctgatatgaaattttacggtggtgctcttgatatgcggcagcaggct
gcttttgatgcaggttctcaaattactgtatcctctggggttagcactcagcagaatcta
caacaaccaattcaaccacatacctcaaagtggttaatggaagaagctgtttcacttgca
aatagcttgaaagctgtcaggttcatggagaatgggcatgtagcagaacatgagtttcca
aaagatttaggcatggcccatcctcctgtacgttcagttcccattcaacaacctgcaaat
gttaatactagtggtatgttctataatcagacaaaaatgctggaaagtgtggttccatca
aacgttgatgtgataacatctggagttcttgctgaaagtttggctgtgaagacctcgatg
gctctgccagcaggcatgagaaaaagtccggttagtcgacctgtaaggcaccttgggcct
ccgccaggctttagtcatgttcctcctaagcaatttaatgaacctgtttctggttcagat
ttgatgagtgggaattcactagcagatgattatagctggttggatggctatcagttgtca
tcgtcaacaaaaggttctggactgaatactgcagctaatttcacttctcaagccatgcct
cagtacattaatagcaataatggcttgatggggacagtcagcttcccttttcccggaaaa
caggtaccgtcagttcagttccagacagaaaaacagaatggctggcagaactaccaggct
cttgagcatctaagagtacagcaagagcagcagctgcagcaacaactcttaaatggaaat
cagcagttcactccaatgcctgagcaatatcacggaaagtctatctggagtagtcgttat
cttgtgtga

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