Ricinus communis (castor bean): 8258409
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Entry
8258409 CDS
T01087
Name
(RefSeq) pre-mRNA-splicing factor RSE1 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8258409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcu03021
]
8258409
03041 Spliceosome [BR:
rcu03041
]
8258409
03036 Chromosome and associated proteins [BR:
rcu03036
]
8258409
Transcription machinery [BR:
rcu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
8258409
Spliceosome [BR:
rcu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
8258409
Complex B
8258409
Complex C
U2 SnRNP specific factors
8258409
Chromosome and associated proteins [BR:
rcu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
8258409
TFTC complex
8258409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
TubC_N
Motif
Other DBs
NCBI-GeneID:
8258409
NCBI-ProteinID:
XP_048226056
LinkDB
All DBs
Position
10:17840850..17854345
Genome browser
AA seq
1389 aa
AA seq
DB search
MAVSEEECSNAKSRSSSPSASSNSAHYLAKCVLRGSVVLQVVYGHFRSPSSNDIVFGKET
SIELVIIGEDGILQSICEQPVFGTIKDLAVIPWNEKFCTRSPQMHGKDLLAVTSDSGKLS
FLIFCNEMHRFFPLTHIQLSNSGNSIRQLGRLLAVDTSGCFIATSAYVDRLALFSLSITG
SSDIIDEQIFYPPESEGHTSFTRSIQRPNISGTIWSICFISRDLSQSSKEHNPVLAIILN
RSSELLNELLLLEWNIRGHTINVIPNVEAGPIHDIVEVPHSNGFAFLFRVGDALLMDLRD
AHHPCRVCKTSFSFLPAAMEEQNFVEDSCRVHDVDDDSLFNVAACALLQLQDYDPMCIDS
EGGSVKSTSKYVCSWSWEPEPDKNPKMIFCIDTGEFFMIEISFDSEDLRVNLSDCVYKGL
PSKSLLWVEGGFLAALVEMGDGIVLKVENDRLRYASPIQNIAPILDMSVVDHHDEKQEQM
FGCCGVAPEGSLRIIRSGISVEKLLRTAPIYQGVTGTWALRMKVTDLYHSFVVLSFVEET
RVLSVGVSFADVTDSAGFLPNVCTLACGLVGDGLLVQIHQTAVRLCLPTQVAHAEGIPLS
SPGCTSWFPQDMSISLGAVGNNLIVVSTSNPCFLYVLGIRLLSAYHYEIYELQHLKLVNE
LSCISIPQKHFLRRRLHSNNLVDDTCASILPTGVDIGSIFVIGTHRPSVEVLCFVPDEGL
RVLARGTISLTNTLGTAISGCVPQDVRLVLVDRLYVLSGLRNGMLLRFEWPSSSSSSISS
MEIPYYGYPIDSCMTNACSGLSTTTAVFPESQTCSVDLTGGAMDGPPINLQLIATRRIGV
TPVFLVPLTDSLDADMIALSDRPWLLQTARHGLSYTSISFQPSTHSTPVCSVECPKGLLF
VAENSLHLVEMVHSKRLNVQKFHLGGTPRKVLYHSESRLLLVMRTELSNDTCSSDICCVD
PLSGSVVSSFKLEHGETGKSMELVRVGTEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVL
CLEHLQSSDSGSMTFCSKAGSSSQRTSPFCEVVGYTAEQLSSSSLCSSPDDSCDGVKLEE
SEAWQLRLAYATKWPGMALTICPYLDRYFLASAGSAFYVCGFPNDNPQRVRKFAIARTRF
TIISLTAHFTRIAVGDCRDGILFYSYHEDTRKLEQVYCDPSQRLVADCILLDVDTAVVSD
RKGSIAVLSCSGDSERNASPECNLTLTCAYYMGEIAMSIRKGSFSYRLPADDMLMGYDAV
TPNNYASHNTIMASTLLGSIIIFIPLTREEHELLEAVQARLVVHPLTAPILGNDHSEFRS
RENPVGAPKILDGDVLAQFLELTSAQQEAILSLPLGLLDTVKKGLKPLPLPIPVNQVVQL
LERVHYALN
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atggcagtttcggaggaggaatgctcgaatgcaaagtctcgatcatcgtctccatctgca
tcatcaaatagtgctcactacttggccaagtgtgttcttagagggagtgtggtacttcag
gtcgtgtatggtcattttcgctctccttcctcaaacgacatcgttttcggcaaggagaca
tcaatagaattggtgataattggggaagatggaattctacagtctatatgtgagcagcct
gtatttggcactattaaagatcttgctgtcataccttggaatgaaaagttctgcacacga
agcccacagatgcatggaaaggaccttttagctgttacttcagattctgggaagctctca
tttctaatattttgcaatgaaatgcacaggtttttccctttaacacacattcaactttcc
aattctggaaactcgatacgtcaactaggaaggctgctggctgttgataccagtggctgc
tttattgctactagtgcatatgttgaccgcttggctttattctctctatctataaccggg
agcagtgatatcattgatgagcaaatattttatcctcctgaaagtgagggccatacaagt
ttcaccagaagtattcagaggcccaatatatctggtaccatatggagcatttgctttatt
tcaagggatttaagtcaatcaagtaaggagcataatcctgtactagccattattctaaat
aggagcagtgaactgctaaacgaacttcttttgttggaatggaacatcagaggacatact
ataaatgttatcccaaatgttgaagcaggaccaatacatgacatcgtcgaagttcctcat
tctaatggatttgcatttctgtttagggttggcgatgctctcttaatggatctaagagat
gctcaccacccctgccgtgtctgtaagacgagcttcagtttcttgcctgctgcaatggag
gagcaaaattttgttgaagattcgtgtcgagttcatgatgttgatgatgatagtttgttc
aatgttgctgcatgtgctttactgcagcttcaggattatgatccaatgtgtatagatagt
gaaggtggtagtgtaaaatcaacctcaaagtatgtctgctcttggagttgggaaccagag
cctgataaaaatccaaaaatgattttttgtatagacacaggagagtttttcatgattgaa
atatctttcgattcagaggaccttagagttaatctttctgattgtgtctacaaaggtcta
ccaagtaaatcgcttttgtgggttgaaggtggtttcctggccgctcttgttgagatgggg
gatggcattgtcctgaaggtggaaaatgacaggctaagatatgcaagccctatacaaaat
attgcaccaatcttggacatgtcagttgtggatcaccatgacgagaaacaggagcaaatg
tttggctgctgtggagtggcccctgaagggtcattaaggattattagaagtggcatcagt
gttgaaaagttattgaggactgcacctatttatcagggcgttactggtacctgggcactt
agaatgaaagtaaccgacttgtatcattcttttgttgtactatcttttgttgaagagacc
agggttctatcagttggagtaagctttgctgatgttactgattcagctggcttccttccc
aatgtctgtactttggcttgcggacttgtaggtgatggtttgcttgtccaaattcaccaa
actgctgttcgcctttgtttgcctacccaggttgctcatgctgaaggtatacctctgtct
tctccaggttgcacatcttggtttcctcaggatatgagtatcagtttgggggctgttgga
aataatttaattgttgtttctacttctaatccatgctttttatatgttcttgggatcaga
ctactatcagcttatcattatgagatatatgaattgcaacatttgaaattggtaaatgag
ttatcctgcatttcgatacctcaaaaacattttctgcgaagaagattacattctaacaat
cttgtggatgatacttgtgcatctatccttccgactggggtggatattggtagtatattt
gttattggcactcataggccttcagtggaagtcctgtgttttgtgcctgacgaaggcctg
agagttcttgctcgggggacaatatctttaacaaatactctaggaactgctatcagtggt
tgtgtccctcaagatgtaaggcttgtactggttgatcggttgtacgttctttctggttta
aggaatggcatgctgcttcggtttgagtggccttcttcctcttcatcttcaatttcttcg
atggaaataccatactatggatatcctattgattcatgtatgacaaatgcttgtagtggt
ttatcaactacaactgcagtgtttcctgagtcacaaacatgttctgttgacttaaccggc
ggcgcaatggatgggccccctattaatctacaactgattgccacccgtcgtattggtgtt
actcctgtatttcttgttcctctgactgattcgcttgatgcagacatgattgcccttagt
gatagaccatggttgttgcaaactgcaaggcatgggctctcttacacgtcgatctcattt
cagccctcaactcattccactcctgtatgctcagtggaatgcccaaaaggacttctattt
gttgcagaaaatagtcttcatttggttgagatggtgcacagcaagagactcaatgtgcag
aagtttcatcttgggggcaccccacggaaagtcctgtaccatagtgaaagtaggctgtta
cttgtaatgagaactgaacttagcaatgacacatgttcatctgatatatgctgtgtcgat
cccctcagtggttcggtagtatcatcttttaaacttgaacatggagaaacaggaaaatcc
atggagttggtgagggtgggaactgaacaggttctggtggttggaactagtctgtcttct
ggtccagctataatgcccagtggtgaagcggaaagtaccaagggccgccttatagtcctc
tgccttgagcacttgcaaagctcagatagtggttcaatgacattttgctcgaaggcaggg
tcatcgagtcaaagaacttcaccattttgcgaagttgttggctatactgccgaacagctg
tcaagtagtagcctttgtagtagtccagatgatagctgtgatggagtcaaacttgaagaa
agtgaggcatggcaattacgtttggcatatgcaaccaaatggcctggcatggcgctcaca
atttgtccatatcttgatcgttacttcctggcatctgctggtagtgctttctatgtatgt
ggttttccaaatgataatccccaaagagtgagaaagtttgctatagcaaggactcgtttt
accataatttcattgactgcacatttcactagaattgctgttggtgattgccgtgatggc
atccttttctattcctatcatgaggatactagaaaactggagcaagtttattgtgaccca
tcacagagattagttgctgattgcatccttctagatgttgatacggcagtggtttcagat
cgtaagggaagcatcgctgtcttgtcatgttcgggtgactcagaacgtaatgcaagtcca
gaatgcaacttgacattgacttgtgcatattatatgggtgagatagctatgagcattagg
aaggggtcattttcatatagactccctgcggatgatatgttgatgggatatgatgctgtc
acccctaataattatgcttcacacaatactatcatggccagtactcttttgggaagcata
ataattttcattcctttaacaagggaagaacatgaactcctagaagctgtgcaagctaga
cttgtagttcatcctctgactgctcctattctaggaaacgatcatagtgagtttcgcagc
cgtgaaaacccggttggagcacccaagatacttgatggtgacgtgctggctcagttcttg
gagctaacaagtgcacaacaagaggcaatattatcgttacctcttggcttactggatact
gttaaaaaaggtttaaaaccattgcctttgcctatcccagttaatcaggtcgtgcaactc
cttgagcgggttcattatgccctcaactaa
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integrated database retrieval system
