Ricinus communis (castor bean): 8258677
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Entry
8258677 CDS
T01087
Name
(RefSeq) protein PIR
KO
K05749
cytoplasmic FMR1 interacting protein
Organism
rcu
Ricinus communis (castor bean)
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8258677
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
8258677
Factors involved in mRNA localization
Other mRNA localization factors
8258677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FragX_IP
CYRIA-B_Rac1-bd
WASH-4_N
Motif
Other DBs
NCBI-GeneID:
8258677
NCBI-ProteinID:
XP_002522029
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All DBs
Position
10:complement(10353058..10369110)
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AA seq
1283 aa
AA seq
DB search
MAVPVEEAIAALSTFSLEDDQPEVQGPAALVSSERGSTASPVEYIDVSAYRLSLSEDTKA
LNQLNALIQEGKGMASVLYTYRSCVKALPQLPDSMKHSQADLYMETYQVLDLEMSRLREI
QRWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDF
SWYKRTFTQVSIQWQDIDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLIV
FAVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFKNDPVI
PAFPDLHLSPAAILKELSMYFQKFSSQTRLLTLPAPHELPPREAQDYQRHYLIINHIGAI
RAEHDDFAIRFASSLNQLLLLKSTDGADSEWCKEVKGNMYDMVVEGFQLLSRWTARIWEQ
CAWKFSRPCKDAISSDANGASASVSDYEKVVRYNYSVEERKALVELISYIKNVGSMMHRC
DTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANTSKPE
ELQSHGGEDSKGSFIYPRSVAPTAAQVHCLQFLIYEVISGGNLRKPGGLFGNSGSDIPVN
DMKHLETFFYKLSFFLHMLDYSVTISTLTDLGFLWFREFYLESSRVIQFPIECSLPWMLV
DHVLESQNAGLLESILMPFDVYNDSAQQALVMLRQRFLYDEIEAEVDHCFDLFVSKLSEI
IFTYYKSWAASELLDPSFLFALDNGEKYSVQPMRFTALFKMTRVKLLGRTINLRSLIAER
MNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSEDLSIDSFGLMLNEMQEN
ISLVSFSSRLASQIWSEMQSDFLPNFVLCNTTQRFVRSSRVPLAPVQKPSVPYAKPNFYC
GTQELNSAHQSFARLHSGFFGNPHMFSVVRLLGSRSLPWLIRALLDHISNKLTALEPMIM
GLQEALPKSIGLLPFDGGVPGCMRLVKENLNWGTKSELKAEVLRGIKEIGSVLYWMGLLD
IVLREVDTKHFMQTAPWLGLVPAADGQILHSQDGGDSPLVNLFKSSITAMVSNPGCPNPS
TFFTMSKQAEAADLLYKANLNTGSVLEYALAFTSAALDKYCTKWSAAPKTGFIDITTSKD
FYRIYSGLQIGYLEESDKQSFNNHEVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNV
AEVEAGSLSQMHRNPHLSQGWESLLEAMKKARRLNNHVFSMLKARCPLEDKTACAIKQSG
APLHRIKFENTVSAFETLPQKGA
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atggcagttccagttgaagaagccattgctgctctttccacattctctttagaggatgac
caaccagaggttcaaggacctgcagctctagtatcaagtgaaagaggatcaactgctagt
ccagttgagtacattgatgtttctgcgtatcgattgtctctttctgaagacacaaaagct
cttaaccagctgaatgcacttattcaagaggggaaagggatggcatcagtgctttatact
tatcgcagttgtgtcaaagcgcttcctcagcttcctgattctatgaagcacagtcaggct
gacttgtatatggagacatatcaagttttagacttggagatgagtcgtctgcgtgaaatt
cagagatggcaagcatcagctgcgtctaaactagcggctgatatgcagcgtttttctagg
cctgaacggcgcattaatggtcctacaataactcacctatggtccatgttgaagttactt
gatgttttagtgcaacttgatcatcttaaaaatgctaaggccagtatacctaatgacttc
tcttggtataagaggacattcacgcaagtcagtattcagtggcaagacattgattcgatg
agggaggagctagatgacttacagattttcttaagcacaaggtgggctatcttgttgaac
ttgcatgttgagatgtttcgtgtgaacaatgtagaagacattcttcaggttctcatagta
tttgctgtggagtcattggagttggattttgcgcttctatttccagagagacacattctt
ctgcgtgttttacctgttcttgttgttctagcaacatcatcagaaaaagacagtgaatcg
ctgtacaagagagtgaaaatcaacaggctgattaatatttttaagaatgatccagtgatt
cctgcattcccagatcttcatctttctcctgctgcaattttgaaagaattgtctatgtac
tttcagaagttttcttcacagactcgtcttctaacccttccagcacctcatgaacttcca
ccccgggaagcacaagactatcagagacattatcttatcatcaatcacataggagctatt
cgtgctgagcatgatgattttgcaattcgatttgcttcatccttgaaccagttgttgttg
ttaaagtcaacagatggcgcggacagtgagtggtgcaaagaagtcaagggaaatatgtat
gatatggttgttgaagggttccagcttctaagtcgatggactgcacgcatttgggaacaa
tgtgcatggaaattttctcgtccatgtaaagatgcaatttcttctgatgcaaatggagct
tctgcatcagtttctgactatgagaaggtggttagatataactacagtgtcgaagaaagg
aaagctcttgttgaactcattagctacataaagaatgttggatcaatgatgcatcgatgt
gacacattagtagctgatgccttatgggaaacaatacatgctgaggttcaagattttgtg
caaaacacgttggccaccatgttgcgaactacttttagaaagaagaaggacctttcaagg
attctttctgatatgcggactctttcagcagactggatggcaaatacaagcaagcctgaa
gagttacaatcccatggaggtgaggatagtaaagggagcttcatttatccaaggtcagtc
gcaccaacagctgcgcaggtgcactgcttgcaattcctgatatatgaagtcatatctggt
ggtaatcttcggaaacctggggggctctttggtaatagtgggtctgacattcctgtaaat
gacatgaagcatttggagactttcttttacaagcttagtttcttcctgcatatgttggat
tactccgtgaccatttcaactttgacggatcttggtttcttatggtttagagaattttat
ctggaatcttctcgtgttattcagtttcccattgaatgctctcttccatggatgttggta
gaccatgtgcttgaatcccagaatgcaggccttcttgaaagtattctgatgccatttgat
gtctacaatgattcagctcagcaagcgctggtcatgctgaggcagagattcctctatgat
gaaattgaggctgaggtggaccactgttttgatttgtttgtttcaaagctgagcgagatt
atttttacatattacaagagctgggcagcaagtgaactacttgatccatcattccttttt
gccttggacaatggagagaagtactctgtccagcctatgcggttcactgctctatttaaa
atgactagagtaaagttgcttgggaggaccattaatttaagaagcttgattgctgaacgg
atgaacaaagtattcagagaaaatcttgagtttctttttgaccgttttgagtcccaagat
ttatgtgcaattgtggaattagaaaaactactggatatcttaaagcatactcacgagctg
ctttctgaagatctttcaatagattcatttggtctcatgttgaatgagatgcaagaaaac
atatcactcgtgtcattttctagtcgacttgcttctcagatttggtcagagatgcaaagt
gatttcctgccaaactttgttctttgcaataccactcaacgttttgtacgatcatcaaga
gttccgcttgctcctgttcaaaaaccatcagttccctatgccaagcccaatttttattgt
ggcactcaggagctgaattctgcgcatcagagttttgctcgcttgcacagtgggttcttt
ggaaatccccacatgttttctgttgttagacttctgggatccagatccttgccttggctt
atccgagctctactagatcatatatcaaacaagctaactgcacttgaacctatgattatg
ggattacaagaagcattgccaaaatctattggactgcttcctttcgatgggggtgtccca
ggttgtatgaggcttgtcaaagaaaatcttaattgggggacaaaatcagagctcaaagca
gaggttcttcgagggataaaggagattggaagtgtattatattggatgggacttcttgac
atagtattgagggaagttgataccaagcatttcatgcaaacagctccttggctgggcttg
gttcctgcagcagatgggcagatactgcattctcaagatggtggggacagtcctcttgtc
aaccttttcaaatcgtcaatcactgcaatggtatccaaccctgggtgcccaaatccgtcg
actttcttcaccatgtcaaagcaggcagaagctgcagatcttttgtacaaggccaacttg
aatactggaagtgtgctggaatatgctcttgcttttactagtgcagcacttgataaatac
tgtaccaagtggagtgctgctcccaagacagggttcattgacataacaacttctaaagat
ttctaccgtatatatagtggccttcaaattggatacctggaggagtctgataaacaatca
tttaataatcatgaagtgctgggtgattcagttgcctggggcggctgcactataatatac
ttgcttgggcaacagctgcattttgagctttttgatttttcgtatcaagtcctcaatgtt
gctgaggtggaggctggatccctctcacaaatgcataggaatcctcatctttctcagggg
tgggaaagcttactggaagcaatgaagaaagcgagaagattaaacaatcatgttttctcc
atgctaaaagcacgttgcccgttagaagacaagacagcttgtgctatcaagcaaagcggt
gcccctctgcatcggattaagttcgagaatactgtttctgcatttgaaacactgccccaa
aagggtgcctga
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