Ricinus communis (castor bean): 8258911
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Entry
8258911 CDS
T01087
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 23 isoform X1
KO
K15166
mediator of RNA polymerase II transcription subunit 23
Organism
rcu
Ricinus communis (castor bean)
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcu03021
]
8258911
Transcription machinery [BR:
rcu03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
Other mediators
8258911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med23
Motif
Other DBs
NCBI-GeneID:
8258911
NCBI-ProteinID:
XP_015583776
LinkDB
All DBs
Position
5:complement(18985420..19001119)
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AA seq
1608 aa
AA seq
DB search
MDQNQRSIAATTAASRGYQFQPARAAIIDLFNLYLGRSSRQKHDDSTREPPNKTQKRVLA
LNRELPPRNEQFLINFEQLQSQFPDQDQLRSVTESVLISLVIQCCNHAPRAEFLLFALRS
LCSIGYINWDTFLPSLLSSVSSAEMSAGQAGQTVSAISSMNSSQNVILPSSSAIPNSSNF
QPSNPTSPLASVHGIGSPVQSAIEPSLLATVSPVKSSDISGNGQPSTSRVNLSSRDNAIN
SLRQLCCKIILTGLEFNLKPATHSEIFHHMLNWLVNWDQRQHGVDESDSVRSWRPEKALI
EWLRSCLDVIWLLVDENKCRVPFYELLRSGLQFIENIPDDEALFTLILEIHRRRDMMAMH
MQMLDQHLHCPTFGTHRILSQTTPNISVEAAANLRYSPITYPSVLGEPLHGEDLANSIQR
GSLDWERALRCIRHALRTTPSPDWWKRVLLVAPSYRNPAHGPTPGAVFVSSMICEATIDR
IVELLKLTNSEVNCWQEWLVFSDILFFLMKSGCIDFVDFVDKLVARLTEGDQHILRTNHM
TWLLAQIIRVEIVVNALTTDARKVETTRKIMSFHREDRSSDPNNPQSILLDFISSCQNLR
IWSLNTSTREYLNSEQLQKGKQIDEWWRTVTKGDRMIDYMNMDDRSIGMFWVVSYTMSQP
ACETVVNWLSSAGVSELAGTSMQSNERLMVMREVNPLPISLLSGLSLNLCLKLVFQLEDS
LFAGQVIPSIAMVETYCRLLLIAPHSLFRSHFSHLAQRYPSLLSKPGVTLLVFEIVNYRL
LPLYRYQGKSKSLMYDVTKIVSTLKGKRGDHRVFRLAENLCMNLILSLRDFFSVKREGKG
PTEFTETLNRVTVITLAIIIKTRGIADADHLLYLQTMLEQIMATSQHTWSEKTLRYFPSL
LHDALSGRIDKRGLAIQEWQQTETTVINQCTQLLSPSAEPAYVMTYINHSFPQHRQYLCA
GAWILMQGHPENINSVNLARVLREFSPEEVTSNIYTMVDVLLHRIQMELQHGHSLQDLLL
KTCANLAFFVWGHELLPLDILLLALTDRDDDPHALRIVISLLDRQELQQRVKLFCMNRGP
PEHWLFSGVFKRLELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLIVYRLVENDAIDPA
DRVLAMYSPFLAYHPLRFTFVRDILAYFYGHLPGKLIVRILNVLDLSKIPFSESFPQHIS
SSNPVMCPPPEYFATLLLGLVNNMLPPLNTNSKYGSLGDGLCNSLRNPNTKTPATSQSGP
TNISDAQKAFYQIQDPGTYTQLVLETAVIELLSLPVTASQIVSSLVQIVVNIQPTLIQSS
NGLHGASNGAGQGSVLPTSPSGGSTDSLGASRSNPSVSGINTATFVSRSGYTCQQLSCLL
IQACGLLLAQLPPDFHLQLYMEASRIIKESWWLTDAKRSLGELDSAVGYALLDPTWAAQD
NTSTAIGNIVALLHSFFSNLPQEWLEGTHAIVKHLRPITSVAMLRIAFRIMGPLLPRLAN
AHSLFNKTLLLLLNTMVDVFGRNSQPSTPVEASEIADLIDFLHHVIHYEGQGGPVQANSK
PRAEVLALCARAAESLRPDIQHLLSHLKPDVNSSIYAATHPKLVQNPS
NT seq
4827 nt
NT seq
+upstream
nt +downstream
nt
atggaccaaaaccagagatcaatagcagctacaacagctgcttctcgtggttaccagttc
cagccggcccgtgctgccattatcgatctctttaatctctatttaggaagaagtagccgc
caaaaacatgacgattcaacacgcgaaccaccgaacaaaacacaaaagcgagtacttgct
ctcaacagagagttacctccccgaaacgagcaattccttataaattttgaacaactgcag
agccagtttccggatcaagatcagctgcgatctgtcacagaatcagtgcttatatcttta
gttattcagtgttgtaaccatgcccctcgtgcagaatttctcctttttgcactgaggagc
ttatgtagtatagggtatattaactgggataccttcttgccatctctgctttcttctgta
tcctctgcggaaatgtcagctggtcaagctggtcaaactgtgtcagctatctcatctatg
aattcctcgcagaatgtgatacttccttcttctagtgcaatccctaattcgtcaaatttt
caaccttcgaatcctacatctccattggcttcggtacatggtattggttctcctgttcag
tctgcaattgaaccgtctttgcttgcaacagtgtctcctgttaaatcttctgatatttct
ggtaatgggcaaccttctacatcaagggttaacttatctagtagggataatgctataaat
agcctacgccaactatgctgtaagattattttaactggtcttgagtttaatttgaagcca
gctactcattctgagatttttcatcatatgttgaattggctggttaattgggatcaaaga
caacatggagttgatgaatctgatagtgtgagatcctggagacctgaaaaagctctgatt
gaatggttgcgcagttgtctagatgttatttggctgttagttgatgagaataagtgtaga
gtgcccttttatgagttattgcgcagtggtttgcagtttatagagaatataccagatgat
gaagctttatttacacttatcttggagatccatcggaggcgagatatgatggccatgcac
atgcaaatgttagatcaacatcttcattgtcccacgtttggtactcatcggattctctca
caaacaactcctaacatttcagttgaagcggcagctaacttgcgctattcaccaatcaca
tatccaagtgtccttggagaaccactgcatggagaggatcttgcaaattccattcagagg
ggaagtttggattgggaaagagctttgcggtgtataaggcatgctcttcgcactactcca
tcacctgactggtggaagcgagtgctacttgtggctcccagctataggaatcctgctcat
gggcctactcctggtgctgttttcgtttctagcatgatttgtgaggcaacaattgataga
attgttgaactactgaagctaacaaattcagaagttaattgttggcaggagtggcttgtc
ttctccgacatactatttttccttatgaagagtggatgtattgattttgttgatttcgtg
gataagctagttgcacgtctcacagaaggtgatcagcacattcttcgcacgaatcatatg
acgtggctgcttgcacaaattattcgagtcgagattgtggtgaatgcattaactacagat
gctagaaaggtagagacaacaagaaagattatgtcatttcatagagaagatcgaagttca
gaccctaataatcctcaaagcatattgcttgattttataagcagctgtcagaacttgcgt
atctggtcattgaacacatcgacgagagaatatctgaatagtgagcagcttcagaaagga
aagcaaatagatgaatggtggagaacagtgaccaaaggtgatcgcatgattgattacatg
aatatggatgatagatcaattggaatgttttgggttgtgtcctacactatgtcacagcca
gcttgtgaaacagtggtgaattggttatcctctgctggagtttctgagttagcagggaca
agtatgcagtccaatgagagattaatggtgatgagggaagtaaacccgttaccaatatcg
ttattatctggcctttcactgaatctatgtctaaagttggtctttcaactggaagattct
ttatttgctgggcaggttattcctagcattgcaatggttgaaacatactgtcgattgctg
ctcattgcacctcactcattgtttcgttcgcacttcagtcatttggcacagaggtatcca
tccttattgagcaagcctggagtgactctactggtgtttgaaattgtgaattaccgatta
cttccactatacaggtaccaagggaaaagcaaatcattgatgtatgatgttacaaaaata
gtttctactttaaaagggaaacgaggagatcatcgtgtatttcggcttgcagaaaacttg
tgcatgaatttaattttatcgctgagagattttttctctgtgaaaagagaagggaaaggt
ccaactgaattcactgaaactttgaatcgtgtcactgtaattactcttgccattatcatc
aaaacccgtggcattgctgatgctgatcacttgctctatctccagactatgctagaacag
attatggcaactagccaacacacatggtcagagaaaacactgcgctactttccttctctt
cttcatgatgccttgagtgggaggatagataaaagggggctagctattcaagaatggcag
cagacagagacaactgttatcaaccaatgtacccagcttctctcaccatctgctgagcct
gcttatgttatgacttacatcaaccatagtttccctcagcaccgacaatatctgtgtgct
ggtgcatggatactgatgcaggggcatccagaaaacatcaatagtgttaatctggcacgt
gttttgagagaattctctcctgaagaagtgacttcaaatatttatactatggtggatgtt
ctacttcatcgtattcaaatggaacttcagcatggacattccttacaggaccttctgttg
aaaacttgtgcaaaccttgcgttttttgtttggggtcatgagctgcttcctttggatatc
ttgcttcttgccctcactgaccgtgacgatgatcctcatgctttgcgaattgtgatcagt
ctacttgacaggcaagagcttcaacaaagagtgaaattattttgtatgaatcgtgggcct
cctgagcattggcttttctctggagttttcaagcgtcttgagttgcaaaaagcacttgga
aatcatctctcatggaaggacaggtatcccacattctttgatgatattgcagctcgtttg
cttcctgtcatccccttaattgtttatagactcgttgaaaatgatgccatagatcctgct
gatagagttctggccatgtattctccatttctagcatatcaccccttaagattcacattt
gttcgtgatatacttgcatatttttatggtcatcttcctggaaagctcattgtgcggata
ctaaatgtattagatctcagcaagataccattttccgagtcgttcccacagcacattagt
tcatcgaaccctgttatgtgcccacctcctgagtattttgcaactctgttgttgggactt
gtgaacaatatgttacccccattaaataccaattccaagtatggatcacttggagatggt
ttgtgcaattcactacggaatccgaacaccaaaactccagctacgtctcagtctgggcca
acaaatatttctgatgcccagaaagctttctatcaaattcaggatcctggaacttatact
caactggttcttgaaactgcagtaattgaactgctatcgcttccggtgactgcatcccag
attgtatcatctctagttcaaattgtggttaatatacaaccaactctaatacagtccagc
aatggtctgcatggagcttctaatggcgctgggcaaggatcagttttaccaacatcccct
tcagggggaagcacagattccttaggtgcaagtagatcaaatccttcagtttccggaatc
aatactgctacttttgtttctcgaagtggttatacttgccagcaactatcttgcttattg
atccaagcttgtggtctcctactggctcagcttcctcctgattttcacttgcaactttat
atggaggcatctcgtataataaaggagagttggtggctcactgatgccaaaagatcactc
ggggaactagactctgctgttggctatgctttgttggatccaacatgggctgctcaggac
aatacctcaacagccattggtaatatagttgccttgctacattctttcttcagtaacctt
ccacaggaatggctagaagggacgcatgcaattgttaaacatctcaggccaataacatct
gttgcaatgttgaggatagctttccgaataatgggtcccctgctaccaagacttgccaat
gctcactctctcttcaataagaccctcttattgcttttaaacacaatggttgatgtattt
gggaggaattcacagccatcaactccagttgaagcatcggaaatagcagatcttattgac
ttcctccatcatgttatccattatgaagggcagggagggcctgtccaggctaatagcaag
cctagagctgaggtcctggctctttgcgcgagagctgcagaaagtcttcgtccagatata
cagcatcttctttcacacctgaagcctgatgtgaattcttctatatatgctgctactcat
ccaaagttagtgcagaatccctcatga
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integrated database retrieval system
