Ricinus communis (castor bean): 8259086
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Entry
8259086 CDS
T01087
Name
(RefSeq) E3 ubiquitin-protein ligase listerin isoform X1
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
rcu
Ricinus communis (castor bean)
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rcu03009
]
8259086
04121 Ubiquitin system [BR:
rcu04121
]
8259086
Enzymes [BR:
rcu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
8259086
Ribosome biogenesis [BR:
rcu03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
8259086
Ubiquitin system [BR:
rcu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
8259086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
zf-RING_2
HEAT_GCN1
zf-rbx1
FANCL_C
zf-ANAPC11
zf-C3HC4_2
zf-RING_16
zf-C3HC4
ParcG
RINGv
MMS19_N
zf-RING-like
IBR_1
C1_1
Motif
Other DBs
NCBI-GeneID:
8259086
NCBI-ProteinID:
XP_002517743
UniProt:
B9RVH4
LinkDB
All DBs
Position
2:complement(15300135..15321331)
Genome browser
AA seq
1912 aa
AA seq
DB search
MGRQKGESGRTKSRPSSSSLAASLLPSGSAAAVGFGGYVGSSRLDTTEESTSFLDIDSEV
ALHLKRLARKDPTTKLKALQSLSLLFKKKSGKDLVLIVPQWAFEYKKLLLDYNREVRRAT
HETMNSLVVAVGRDLAPHLKSLMGPWWFSQFDPVSEVSLAAKCSLQAAFPAQEKRLDALI
LCTTEVFMYLEENLKLTPQSMSDKAIALDELEDMHQQVISSSLLALATLLDVLVCVQSER
PGFENVAAELKYASKARATAISFAEKLLSAHKYFLDFMKSHSPVIRSATYSALKSFMKNI
PHAFNEGNMKVLAAAILGAFQEKDPTCHSSMWDAFLLFSKRFPESWTLVNIQKIVLNRFW
HFLRNGCFGSQQVSYPALVLFLGTVPPKLIAGEKFFLDFFHNLWDGRTSSHSTIADVLKF
FSAFKECFLWGLQNASRYCENPDSVHQFRVTIVSNILIKLLWQEYLFFAGSNNQNEAPIG
TSEDPPKHAGAISLQKIVESRNIKYPMSYCQELGKCIVEILSGIYLMEHDLLSPFCVAIQ
ENCFEIFLQNENIGRNTETVEQVIKFFSLLGQHSVQKGETWPLVCLVGPLLAKSFPLIRS
IDTTDGLRLLSVAVSLFGPRKIVRELFLGNEGSQCSSSLYDDRDKELEPEYFMQVFRETF
ILWCLAGCNSSSSARLDLLLALLNDESFPEQWSAVISYAISQGGTRTEPVSLESNYLPLL
AMLLEKARVEIAKRKVRDDSHHPHWLNLGDWHHELLESAVVAVARSCFTYRASAAQFVCA
VLGGSVGGNQISFVSRNSLILVYKEVSKRLLALICESPFSSIRDFGILLTPGANNFGVDD
KNSMDVIKIAQFALDILVGSLYCLKTLSEEVELVSGILASVFIINWEQSIEATMDDALDD
DSKKKDKGWSEFNESLHGFYNKISDEFWKGLSISILKRLGSVLVQFIRSIIFKEGNLNEN
RITSLCCEWMLEVLACLCHNQDEEQNLLNQLFRKDDTWPSWITPDFGAPVQAASLNAVDV
YIDIHASGTQKFVSFIEKLMFKIGISRVFVGHVDQMLTSSLNETANEEHTARAWLAAEIL
CVWKWPGGSPTASFLPLLSASAKNWNYFVHESLFDSIFNILLDGALVHAEGQADFSFNSW
PAVGDELNKIEEPFLRALLSLLITLFKDDIWRGDKAKRVFELLVNKLFIDEAINQNCLKI
LPPIVGVLMQPLCWRSVIPSEPSGDILHNSEENWMQDTVRDWLQRVLAFPPLVAWQAGEG
MEEWFQLVIACYPLRAMGNTKSLKLERNISLEEKTLIFDLFRKQRQNPSLLVVGKQLPVV
KMFLSKLMVISVGYCWKEFAEEDWDFFFLQLRSWIQSAVVILEEVTENVDDAITNSTTTD
NLDVLRKLEQLVSISDLSPINVAVNALASFSLFSGIFSLQQADMNSLNPLIMERWELARD
RILEGILRLFFCTGTAEAIASSYCHEAASIVVKSRLHSPYFWELVASIVVNTSTYARDRA
VKSVEFWGLSKGPISSLYAILFSSLPVPPLQYAAYVILTTEPVSQLAVVVEDASFSLDGD
NDISGNLDSSRFESSSERNVHLKEELSCMIEKLPCEVLEMDLMAHQRVNVFLAWSVLLSH
LWSLPSLSATRERLVQYVQESANSVILDCLFQHIPLELYMAQSLKKKDADLPVDASEAAT
AATSAIRTGSLLLPVESLWPVAPEKMASLSGAIFGLMLRVLPAYVRGWFTDLRDRSTSSL
IETFTRTWCSPPLIVNELYRIKTANFADENFSVSVSKSANEVVATYTKDETGMDLVIRLP
ASYPLRPVDVDCMRSLGISEVKQRKWLMSMMLFVRNQNGALAEAIRIWKSNFDKEFEGVE
ECPICYSVIHTTNHSLPRLACRTCKHKFHAACLYKWFSTSHKSSCPLCQSPF
NT seq
5739 nt
NT seq
+upstream
nt +downstream
nt
atgggcagacagaaaggagaatccggcaggaccaagtcccgtccttcaagcagcagtctt
gccgcgtcgctgttgccatcgggttctgctgccgctgtcggatttggcggctatgttggt
agctctcgtctcgatactaccgaagaatcaacctcctttttggatatagatagtgaagtg
gcactgcacttgaaaagactggcccggaaggatcctactaccaagcttaaagctctgcaa
tctctgtctctcctgttcaagaaaaagtctggaaaggacttggtgctaattgttccacaa
tgggcatttgagtacaagaagctgttgttggattacaatagagaagtccggcgagccact
catgaaaccatgaacagccttgttgttgccgtaggaagagatttagctccacatttgaag
tcattgatgggaccatggtggttttctcaatttgatcctgtttctgaagtctctctggct
gcaaagtgctcactacaggcagcctttccagcacaagaaaaaagattagatgctttaatt
ttatgcacaactgaagtatttatgtatttggaggaaaacttgaagctcacaccgcaaagc
atgtcagataaagcaattgctttagatgaattggaggacatgcaccagcaggtgatatct
tcatcgttattggcattggccacccttcttgatgttttggtttgtgtgcaatctgaacga
cctggttttgaaaatgtagctgccgaattaaaatatgcttcaaaggctagagcgactgct
atctcttttgctgaaaaattattatctgcacacaaatattttttggactttatgaagtcc
catagccctgtaatccggtcagctacatattcagcattaaagagttttatgaaaaatatt
cctcatgcttttaatgaaggaaatatgaaagttcttgctgctgcaatacttggtgctttt
caggaaaaggatcctacttgtcactcgtcaatgtgggatgcatttttgctattttctaaa
aggttccctgaaagttggactttggtaaatatacagaaaattgtgttaaaccgcttttgg
cattttcttaggaatggatgctttggatctcagcaggtctcttatccagctctggttcta
tttttgggcactgtgcctcccaaattaatagcgggagagaagttttttcttgattttttc
cataatctatgggatggaaggacctcatcccattcaacaattgctgatgttctaaaattt
ttcagtgcatttaaagaatgtttcctttggggattgcagaatgcttcaagatactgtgaa
aatcctgattctgtacatcaatttagagttactattgttagcaatatcctgataaagctt
ctgtggcaagaatacctattttttgctggctcaaataatcagaatgaagcacccatagga
acatctgaagatcctcctaagcatgctggtgcaatttccctccagaagatagtggagtcg
cgaaatatcaaatatcctatgagttattgtcaagaattgggaaaatgtattgtagaaatt
ctttccggcatttatttgatggagcatgatctactctctcctttttgtgtggcaattcaa
gagaattgctttgagatatttctgcaaaatgagaacataggaagaaatactgaaactgtg
gaacaagtcattaaatttttctcattactgggacaacattcagtgcagaaaggtgaaact
tggcccttggtttgcttagtgggaccattgttggcgaagtctttcccattgataagatct
attgacacaacagatggtttgagacttctgtcagttgcagtttctttatttggaccgcgc
aagatagtccgggaactttttttgggcaatgaaggaagccagtgctcctcttccctttat
gatgatagggacaaagaattagagccagagtattttatgcaagtcttcagagaaacattt
atcctgtggtgtttggctggatgtaattcctctagtagtgctcgacttgatcttttgctt
gcattactgaatgatgaatcttttcctgaacagtggagtgcagttatttcttatgcaatt
agtcaaggtggtactagaactgagcctgtgtccctagaatcaaactacttacctctgttg
gcaatgttattagagaaagcaagagttgaaattgcaaagagaaaagtgagagacgattcg
catcatccgcactggttgaacctaggcgactggcatcatgagcttcttgaatcagctgta
gttgctgtagcccgttcctgttttacctatagagcttcagctgctcagtttgtgtgtgct
gttcttggtggctcagtaggaggcaatcaaatctcctttgtatccagaaattcattaatc
ttggtatataaagaggtttccaaaaggttgcttgctttgatttgcgagtcccctttcagt
tcaattagggattttggcattcttttaactcccggagctaataattttggggtggatgat
aaaaactctatggatgtgattaagatagctcagtttgcattagatatacttgtgggtagt
ttgtattgcttaaaaacacttagtgaggaagttgagctagtatcaggtattttggcttca
gtgtttatcattaactgggaacaaagcattgaagcaacaatggatgatgcacttgatgat
gactcaaagaagaaagataagggctggtcagagtttaatgaatctttgcatggtttttac
aataagataagtgatgaattttggaaaggcctcagcatcagcattttgaagagattgggg
agtgtcttagttcagtttattaggtctatcattttcaaggaaggaaaccttaatgaaaat
agaatcacttctttgtgctgtgaatggatgcttgaagttcttgcatgtctctgccataac
caagacgaggaacaaaatctattaaaccagctcttcaggaaggatgatacttggccatca
tggattactccagactttggtgcacctgtgcaggcagcttctttaaatgctgtcgatgtc
tacattgatatccatgcatctgggactcagaaatttgtttctttcattgagaagcttatg
ttcaagatagggatcagtagagtttttgttggtcatgtggatcagatgcttacctcttct
ctgaatgaaacagcaaatgaagagcacactgctcgagcctggcttgctgctgaaatatta
tgcgtgtggaaatggccaggaggaagtcctacagcttctttcttgccccttctgagtgca
tctgcaaagaattggaattattttgtccatgaaagtttgtttgattctatcttcaacatc
ttacttgatggtgctcttgttcatgcagaaggtcaggcagacttctcattcaattcatgg
cctgctgtaggtgatgaattaaacaaaattgaagaaccatttctgagagctcttttgtca
ttgcttatcactctcttcaaagatgatatatggagaggagacaaagctaaaagagttttt
gagttgcttgtaaataaactttttatagatgaagcaataaaccaaaattgtttgaagatt
cttcctccaattgtcggtgttcttatgcaaccattatgttggagaagtgttatacctagc
gaacctagtggggatatacttcataattcagaggaaaattggatgcaggatactgttaga
gattggctccaaagggttctggcattcccacctttagttgcatggcaagcaggagaaggt
atggaggaatggtttcagctggttattgcttgttatcctttaagagcaatgggcaatact
aaatcactgaagctagagagaaacataagccttgaagagaaaacactcatatttgattta
ttccggaagcagagacaaaatccaagtctcttggtagtaggtaagcagttgccagtggtg
aagatgttcctatcgaagctaatggttatttctgttggttattgctggaaagaatttgct
gaagaggactgggacttttttttcttgcaattaaggtcttggattcagtccgcagttgta
atattggaggaagttacggaaaatgtggatgatgctatcactaacagcactacaactgat
aatttggatgttcttaggaaacttgagcagcttgtttccatctcagacctttctcctata
aatgttgctgttaatgctttagcatctttttcattgttttctgggatctttagcctccaa
caagcagacatgaatagtttgaatcccctgataatggaaagatgggaattagctagagat
cgcatcctggaaggcattcttcgcttattcttttgcactggcactgctgaggcaattgca
agttcttattgtcatgaagctgcatctattgtagtaaaatctcggcttcactctccctat
ttctgggagttagtggcatcaattgttgttaacacatctacatatgctagagatagagca
gtcaaatcagttgaattttgggggttaagcaaagggcctataagctctttgtatgcaatt
ctcttctcctctttgccagttccaccattacagtatgctgcttatgttattctcacaact
gaacctgtttcacagttggctgttgtggtagaagatgccagtttttccctagatggtgat
aatgatattagtggtaacctggattcaagcaggtttgaatcatcatcagaaaggaatgtc
catttgaaggaggaattatcttgcatgattgagaagttaccttgtgaggttcttgaaatg
gatttgatggctcatcaacgggtaaacgtcttccttgcttggtctgtgttgctatctcat
ttatggtcattgccatcactatcagccacaagggagaggttggtccagtatgtacaagaa
tcggctaattcagtgatactagactgcctcttccagcatattcctttggagttatacatg
gctcaaagtttgaaaaagaaggatgcagatcttcctgttgatgcttcggaggctgcaact
gcagcaacatctgccatcaggacaggttcattattgttgcctgtggagtcactatggcct
gttgcacctgaaaaaatggcttcactttctggagcaatatttggattgatgcttcgtgtt
ctccctgcatatgttcgaggatggtttactgatttacgcgatcgttcaacatcatctcta
attgaaacatttacaaggacttggtgcagtcctcctctaattgtgaatgagctgtaccgg
ataaagactgccaattttgctgatgagaatttttcagttagtgtaagcaaatcggcgaac
gaggtagttgctacatatacgaaggatgagactggaatggatctagttattcgtcttcct
gcatcttaccctctgcgtcctgtagatgttgattgtatgagaagtctcggcattagcgaa
gtcaagcaacgaaaatggttgatgtcgatgatgttgtttgttcgtaatcagaatggagct
ctagctgaagcaatacgaatatggaaaagcaactttgataaggaatttgaaggtgtcgaa
gagtgccctatatgttacagtgtcatccacactaccaatcacagtcttcctcgccttgct
tgcagaacttgcaagcacaagtttcatgctgcttgcctgtataagtggttctcaacatct
cacaaatcatcctgcccattatgccagtctccattctga
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integrated database retrieval system
