Ricinus communis (castor bean): 8259187
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Entry
8259187 CDS
T01087
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
rcu
Ricinus communis (castor bean)
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcu03041
]
8259187
Enzymes [BR:
rcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
8259187
Spliceosome [BR:
rcu03041
]
Complex C
Other components
Complex C specific factors
8259187
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
AAA_19
AAA_30
HA2_N
Cas3-like_C_2
ResIII
AAA_7
Motif
Other DBs
NCBI-GeneID:
8259187
NCBI-ProteinID:
XP_002522527
UniProt:
B9S958
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All DBs
Position
5:complement(22549900..22560117)
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AA seq
696 aa
AA seq
DB search
MALFWKPGTEKPPLLDDEEGGVVFLSSSVSSSSSGYGYVSIEKQRQRLPVYKYRTAILYL
VETHATSVIVGETGSGKTTQIPQYLKEAGWADGGRLIACTQPRRLAVQAVASRVAEEMGV
KLGEEVGYTIRFEDLTNSDVTKIKFLTDGVLLREMMDDPLLTKYSVIMVDEAHERSISTD
ILLGLLKKIQRRRPELRLIISSATIEAKSMSAFFQASKRRRGLEADELGPRKEPAILSVE
GRGFNVQILYVEEAVADYVRATVSTVLSIHDQEPAGDILVFLTGQDDIDAAVQLLTEEAQ
VKGKNSSGLIVLPLYSGLSRAEQDLVFSPTPRGKRKIVISTNIAETSLTMEGIVYVVDSG
FSKQRFYNPISDVENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEDFINEMPTQGIP
EMQRSNLVSSVIQLKALGIDNILGFDWPASPSPEAMIRALEVLYSLGILDDDAKLTSPVG
FQVAEIPLEPMISKMILSSNQLGCSEEIITIAAVLSIQSIWISTRAQKELDEAKLRFAAA
EGDHVTFLNVYQGFLQSGKSSQWCHKNFVNYHAMKKVIEVREQLRRIALRIGIVLKSCER
DMLIVRKAVTAGFFANACRLEAFSHNGMYKTVRGSQEVYIHPSSVLFRVNPKWVIYHSLV
STDRQYMRNVITIDPSWLTEAAPNFFQQQRSDPTGH
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgttttggaaaccaggcacagagaagcctcctcttctagacgacgaagaaggc
ggtgtcgttttcttatcctcttccgtctcttcctcttcgtcagggtatggatatgtgagt
attgagaagcagagacagagattaccggtgtacaagtacagaacagcgattctgtatctg
gttgagactcacgctacttctgttattgttggcgagactggcagcggcaaaactactcag
attcctcagtatcttaaagaagcaggttgggctgatggtggacgtctcattgcttgcact
caaccaagaagattggcagttcaggctgttgcttcaagggtcgctgaagagatgggggtc
aagcttggagaagaagttggctacacgattcggtttgaggatcttacaaattcagatgta
acaaagataaaatttctcactgatggggttttacttcgagaaatgatggatgatccactt
ttgaccaagtatagtgtcataatggtagatgaggctcatgaaaggtctatatcaactgac
attttgctgggtctcctgaaaaagattcagcggcgtcgacctgagttgcggttgattatc
tcctctgctacaattgaagcgaaatctatgtctgctttcttccaagccagcaaaaggcgt
cgaggacttgaagcagatgaacttggtccaagaaaggagcctgcaattttatcagttgag
ggtagagggtttaatgtacaaattctttatgttgaggaggcagttgcagactatgtgcgg
gctactgtttctacagtgttgtcaattcacgatcaggaacctgcaggtgatattctggta
tttcttactggtcaagatgatatagatgctgctgttcagttgctgactgaagaagctcaa
gtcaaaggaaagaactcttcagggttgattgttctacctttgtattcgggtctctcacgt
gcagagcaggatctggtgttttcacccactcctagagggaagaggaaaatagttatatca
accaatattgctgagacatcattgactatggagggcattgtctatgttgttgatagtgga
ttctcaaaacagaggttctacaatccgatctctgatgtcgaaaatctggttgtggcacca
atttctaaggcatctgctagacaaagagctggtagagccggaagagttcgacctggaaag
tgttacaggttatatacagaagaagattttatcaacgaaatgcccacgcaggggatccct
gagatgcagcggtcaaatcttgtctcctctgtgattcagctaaaagccttgggcatagac
aatatattaggctttgattggccagcatctccatctcctgaagcaatgatacgagcactt
gaagtcctttattcattgggaatccttgatgatgatgctaaacttacttcaccagttgga
tttcaagtagcagagattccactggaaccaatgatctcaaaaatgattttatcttccaac
caacttggatgttcagaggagatcatcaccattgctgctgttctctccattcagtctatt
tggatttctactagagcacagaaggaactggatgaagccaaattgaggtttgcagctgct
gagggtgaccatgttacattcctaaatgtttaccaagggtttcttcaatctggaaaatct
tcacagtggtgtcataagaactttgtgaattatcatgccatgaaaaaagttattgaagtt
agagaacaactcagaagaatagcactgaggataggcatagtcttaaaatcatgtgaaaga
gatatgctgattgtaagaaaggctgtgactgctggtttttttgcaaatgcatgtcgttta
gaggctttcagtcataatgggatgtataagactgttagaggttctcaagaagtctatatt
catccatcatctgtgttattcagagtaaacccaaagtgggttatataccattctcttgtc
tctactgatcgacaatacatgcgaaatgttataactatcgacccttcttggctaacggag
gctgcaccaaattttttccagcaacaacgctcagatcctactggtcactaa
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