Ricinus communis (castor bean): 8259463
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Entry
8259463 CDS
T01087
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03013
Nucleocytoplasmic transport
rcu03015
mRNA surveillance pathway
rcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8259463
09122 Translation
03013 Nucleocytoplasmic transport
8259463
03015 mRNA surveillance pathway
8259463
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8259463
03041 Spliceosome [BR:
rcu03041
]
8259463
Enzymes [BR:
rcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
8259463
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
8259463
Spliceosome [BR:
rcu03041
]
Complex C
Other components
EJC/TREX
8259463
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
8259463
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RVT_2
ResIII
CMS1
Retrotran_gag_2
Helicase_C_2
Rap1_C_Sp
Motif
Other DBs
NCBI-GeneID:
8259463
NCBI-ProteinID:
XP_048227893
LinkDB
All DBs
Position
3:complement(31935041..31939851)
Genome browser
AA seq
428 aa
AA seq
DB search
MGETRDNDAYEEELLDYEEEEEKAPDSVAAKVNGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTSGQVIALV
LCHTRELAYQICHEFERFSTYLPDTKVAVFYGGVHIKIHKDLLKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaacaagggacaacgacgcttacgaggaggagcttctcgattacgaggaagaa
gaagagaaggcccctgattctgttgcggctaaagtcaatggcgaatccgccaagaagggc
tatgttggaatacacagttccgggttcagagacttccttttgaagccagagcttcttcgg
gctatagttgactcgggatttgagcatccttccgaagttcaacacgaatgtatacctcaa
gctatattgggcatggatgtcatctgccaagctaaatctgggatggggaagactgccgtt
tttgttttgtctactctacagcaaattgaacccacatctggccaagttattgcacttgtt
ctctgtcatactagggagttggcttaccagatctgtcacgagttcgagaggttcagtact
tacttacctgataccaaggttgctgtcttttatggtggtgtccatatcaagattcacaaa
gatctattgaaaaatgaatgcccacatattgttgtcgggactcctggaagaatattggca
ctggcaagagataaggacctttctttgaagaatgtgaggcattttatccttgatgaatgt
gacaagatgcttgaatcacttgacatgaggagagatgtgcaagagatcttcaagatgact
ccacatgataagcaagttatgatgttttctgcaactctcagcaaagaaatccgcccagtt
tgcaagaaatttatgcaagatccaatggaaatttacgtcgacgatgaagccaagttgacc
cttcatggtcttgtacagcactacatcaaattgaccgagctggagaagaatcgaaagttg
aatgatctccttgatgcattggactttaatcaagtagttatttttgtcaaaagtgtgaat
agagcagcagagctgaacaagttacttgtggaatgcaattttccatcaatttgcatccat
tctggcatgtcccaagaagaaaggttgacgcgctataagggattcaaggagggccataaa
agaattcttgtggccacagatttggttggtcgtggaattgatattgagcgggtcaacatt
gttatcaactatgatatgccagactctgccgatacttatctacacagagttggtagagct
ggtaggtttggcacaaaagggctggcaattacatttgtttcatctgcttccgactctgat
gtcttaaatcaggttcaggagaggtttgaggtggatataaaggagctccctgagcagatt
gatacatctacatacatgccatcatag
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