Ricinus communis (castor bean): 8259464
Help
Entry
8259464 CDS
T01087
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu00040
Pentose and glucuronate interconversions
rcu01100
Metabolic pathways
Module
rcu_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
8259464
Enzymes [BR:
rcu01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
8259464
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
8259464
NCBI-ProteinID:
XP_015572485
LinkDB
All DBs
Position
3:complement(31924050..31926342)
Genome browser
AA seq
405 aa
AA seq
DB search
MQKVLIGLLLFCFAVSTIVVEGARPSILNVVDFGAIGDGQTNDSMAFLQAWNALCEATTA
PLLRVPAGKTFLLQPVIFSGPCSSSRVRIQVLGSIVAPRSRDAWKNGTSESWLSFSQVLN
LTISGTGQIDGQGSAWWTHPRSNHLKEMYKNYNRPTALHFSQCDNLILRGLTHINSPRNH
ISINSCIGVIISHLNIIAPKESPNTDGIDISRSSYVKIRDSNISTGDDCVAVNGNSSYIR
IINVVCGPGHGISVGSLGAKGLTDTVEEVHVRNCTFNRTQNGVRIKTWQGGQGFARKISF
TQITLIASENPVIIDQYYCDGEQNCKNGTTAVAVSNVIYSDIKGTSAQKEAIRLDCSEIG
CTNIVMNRIYIAPSAPLVHQTEAYCQNVRGTSNNVTPNVNCLSGS
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaggtattaattggccttttgctcttctgctttgctgtatctactatagttgtt
gaaggtgcacgtccatcaattcttaacgtagttgatttcggtgccattggagatggccaa
actaatgattccatggcttttctacaagcatggaatgctttatgcgaagctacgacggct
ccactcctcagggtacctgcagggaagacatttttattgcaacctgtgatattttcaggt
ccctgctcgtctagtagggttcgtattcaggttcttgggagcatagtagcacctagaagt
agagatgcttggaaaaatgggacatcagaaagctggttatcattctcacaagttctcaat
ctcactatttctggtaccggacaaattgatggtcagggctcagcttggtggacccatcca
cgatctaaccatttaaaggaaatgtataagaattacaacagacccactgctctacacttt
agccaatgtgacaatcttatactaaggggtctcactcatattaacagtcccagaaatcat
atatcaataaattcttgcattggtgtgattatctctcatcttaatataattgcacccaag
gaaagccctaatacagatggaattgacatctctcgttcaagctatgttaagattcgagac
tctaacatttcaactggggatgactgtgttgctgtcaatggtaattcctcctatatcaga
attatcaatgttgtatgtggtccaggtcatggcatcagtgtgggaagtttaggagcaaaa
ggacttactgatactgtggaagaggtgcatgtccgcaattgtactttcaacagaactcaa
aatggagttagaatcaagacatggcagggcggacaagggtttgcaaggaagatctctttt
acgcaaatcacattaatagcatctgaaaatcctgtaataatcgaccagtattactgcgac
ggggaacaaaactgcaaaaatgggacaacagcagtagcagtgagtaatgtaatatacagt
gatattaaaggaacttcagcacaaaaggaagcgattagattggattgcagtgaaataggc
tgcaccaacattgtaatgaatagaatctatatagccccatcagcaccattagttcatcag
actgaggcctattgccaaaacgtcagaggaacttctaacaatgtaacacctaatgtcaat
tgcctttcaggatcatga
DBGET
integrated database retrieval system
