Ricinus communis (castor bean): 8259683
Help
Entry
8259683 CDS
T01087
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
rcu
Ricinus communis (castor bean)
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
8259683
Enzymes [BR:
rcu01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
8259683
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
RhgB_N
CarboxypepD_reg
Y_Y_Y
Motif
Other DBs
NCBI-GeneID:
8259683
NCBI-ProteinID:
XP_015579690
LinkDB
All DBs
Position
7:5495696..5501852
Genome browser
AA seq
673 aa
AA seq
DB search
MGFLGGWRFAVYFLLFAIASSVKTPVRKINPGRTKNSSDVGFHVQLQEIKHERVVIDNGI
IEVTLSSPDGNVIGIKYRGIDNVLESLNEDDNRGYWDVVWNKPDESDIFDKIQATDFSII
MADEDQVEVSFSKKWDSSRDKSMVPLNIDKRYIVRRGCSGLYVYAILERLEGWPDVDMDQ
IRVVFKLRQEKFHFMAVSDDRQRIMPMPEDRATGQPLAYPEAVLLTRPTNPELRGEVDDK
YQYSCEDEDNKVHGWTSDDPPVGFWMITPSNEFRVGGPMKQDLTSHVGPTVLNMFSSNHY
AGKDLNTEYRNGEPWKKVLGPVFVYLNSMSPTDHNSSALWEDAKAQMSVEVGSWPYDFVQ
SEEFPSSDQRGTVSGQLLVRDRYINERLLYARSAYVGLAPPGYAGSWQRDSKGYQFWTRA
SRKGIFSIKNVRPGNYSLYAWVPGVIGDYKYNVDITILPGSKIQLRVLIYDPPRNGPTLW
EIGIPDRSASEFYVPDTYPTLMNKLYTDHPTEKFRQYGLWARYADLYPNNDLVYTVGVSN
YVQDWFFAHVNREIGNKTYDATTWQIIFQLDSVKQGGNYTLQLALASATVSEILVRFNDP
SSNRPLFTTGLIGTDNAIARHGIHGLYWLFTINVPSDQLRDGKNIIYLTQARNDGPFRGV
MYDYIRLEGPAET
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgggttttcttggcgggtggcgatttgcagtctacttcttgttgttcgccattgcctct
tccgtgaagaccccagttagaaaaattaatccaggaaggaccaaaaatagctcggatgtc
ggttttcatgtgcagctgcaagaaataaaacatgaacgggtggtcattgacaatggaatc
atcgaagtcacattgtcaagtcctgatggtaatgtcattggaattaaataccgaggaatt
gataacgtgcttgaaagtctcaatgaagatgataaccgagggtattgggacgttgtctgg
aacaaaccagatgagagtgacatctttgacaagatacaagcgacagatttcagtataata
atggcagacgaagaccaagtagaggtttcattctctaaaaaatgggactcatctagggac
aaatccatggttcccttaaatattgacaaaaggtatatagtgcggcgtggctgttcaggg
ctttacgtatatgccatattggaaagattagaaggatggcccgatgtcgacatggatcaa
ataagagtcgttttcaagctccgacaagagaagtttcatttcatggcggtatcggatgat
aggcaaagaataatgccaatgccggaagaccgagccaccggccagccgctggcttatcca
gaagctgttctcttaacccgcccgactaacccagaacttagaggagaggtagatgacaaa
taccaatactcatgtgaggatgaagacaacaaggttcacggttggacttccgatgaccca
cctgttgggttttggatgatcactcccagtaacgaatttcgcgttggtggccccatgaaa
caagatcttacctcccatgtcgggcctactgtccttaatatgtttagtagtaatcattat
gctgggaaggacctgaacacagagtatagaaatggagagccatggaaaaaagttcttgga
cctgtatttgtctatctaaactccatgtcacctactgatcataattcttcagcactttgg
gaagatgctaaagcacagatgtctgttgaagtcggaagctggccttacgattttgttcaa
tctgaggaattcccttcttctgatcaaagaggaactgtttcgggtcaattattagttcgt
gacagatacatcaatgagaggctattgtatgctagatctgcttatgtaggattggctcca
ccaggatatgcaggctcgtggcagagggattccaagggttatcaattctggactcgagct
agcagaaaaggaattttcagcataaaaaatgttcgacctgggaactatagtttgtacgca
tgggtccctggagttattggagactacaagtataacgttgatatcaccattttaccagga
tccaagattcaattaagggtccttatatacgatcctccaagaaatggtccaactctttgg
gaaataggcattcctgatcgttctgcttctgagttctatgtgccggacacatatccaaca
cttatgaacaagctatacactgatcacccaacagaaaaatttaggcaatatggattgtgg
gcaagatatgctgatttatatcctaataatgatcttgtatatactgttggtgttagtaac
tacgttcaagactggttctttgcccatgttaacagagaaataggaaacaagacatatgat
gcaaccacttggcaaattatatttcaactcgacagtgtaaaacaagggggaaattacact
cttcaactggccctggcatcagctactgtatcagaaatcctggttcggttcaatgacccg
agttcaaatcgacctctattcacgacagggctaatagggacggataatgccattgcaaga
catggaattcatggattgtactggttgttcaccattaatgtacccagtgatcaacttcgt
gatggaaaaaatataatttatttaactcaagcaagaaatgatggccccttccgcggtgtc
atgtatgattacatccgtttagaagggccagcggaaacttaa
DBGET
integrated database retrieval system
