Ricinus communis (castor bean): 8259761
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Entry
8259761 CDS
T01087
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8259761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8259761
03012 Translation factors [BR:
rcu03012
]
8259761
Enzymes [BR:
rcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
8259761
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
8259761
Translation factors [BR:
rcu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
8259761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
AAA_19
Rad17
T2SSE
Cas3-like_C_2
ABC_tran
Motif
Other DBs
NCBI-GeneID:
8259761
NCBI-ProteinID:
XP_002524066
UniProt:
B9SDJ7
LinkDB
All DBs
Position
10:complement(17340215..17349714)
Genome browser
AA seq
1039 aa
AA seq
DB search
MSMRMRSLGSHSFSFTFFSKRFPLLTPSISTTRTKPFHLHISPFSMSHRPNFQGGRRGGG
GGRGGRGRGGVGGRGGGGRGEQRWWDPVWRAERLRQQAAEMEVLNENEWWDKMEKMKNSG
DQEMIVKRNYSRTDQQTLSDMAYQLGLYFHAYNKGKALVVSKVPLPNYRADLDERHGSAQ
KEIQMSTETEKRVKNLLNCTQREAPVNDSGASSGQGDNRSSTGPKITKPVSTIETDSAKE
KLSLELKQRRDKTMASDSLKEMQSFREKLPAFKMKGEFLKAVAENQVLVISGETGCGKTT
QLPQYILEEEITRLRGADCNIICTQPRRISAISVAARISSERGENLGETVGYQIRLEAKR
SAQTHLLFCTTGVLLRQLVQDPDLTGVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLR
LILMSATINADLFSKYFGNAPTMHIPGLTFPVTEFFLEDILEKSLYKIQSEPDNFRGTSR
RRRRREQDSKKDPLTELYEDVDIDSEYKNYSSSTRVSLEAWSGSQLDLGLVEATIEYICR
HEGGGAILVFLTGWDEISKLLDRVKGNKLLGDQSKFLVLPLHGSMPTINQREIFDRPPPN
KRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRA
GRVQPGVCYRLYPKIIHDAMLQYQLPEILRTPLQELCLHIKSLQLGAVGSFLAKALQPPD
PLSVQNAIELLKTIGALDDNEELTPLGRHLCTLPLDPNIGKMLLMGCVFQCLNPALTIAS
ALAHRDPFVLPIEMKNEADAAKQSFAGDSCSDHIALVKAFEGYMEAKCNRNERAFCWENF
LSPITLRMMEDMREQFLNLLSDIGFVDKSKGASAYNQYSHDLEMVSAILCAGLYPNVVQC
KRRGKRTAFYTKEVGKVDLHPASVNAGIHLFPLPYMVYSEKVKTTGIFVRDSTNISDYAL
LLFGGNLIPSKNGQGIEMLGGYLHFSASKSVLELIRKLRAELDKLLSRKIEEPSLDISFE
GKAVVSAVVELLHSYNVRY
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgcgcatgcgctcactcggctctcattctttctctttcactttcttttccaaa
cgtttcccactgttaaccccttccataagcactactagaactaaaccttttcatctacat
atttcgcctttctctatgtctcaccgtccaaactttcaaggtggccgccgtggcggggga
ggcggccgtggaggacgtggacgaggcggagtaggaggaagaggtggcggaggtcgtggc
gagcagcggtggtgggatccagtgtggcgagctgagcgattaagacagcaagctgctgag
atggaagttcttaatgagaatgaatggtgggataagatggagaaaatgaagaactcaggg
gaccaagaaatgattgtaaaacgtaattacagtcgcaccgatcaacaaactctctctgac
atggcttatcaactaggcctttattttcatgcatataataaaggcaaggcccttgtggtt
agcaaagttccattgccaaattatcgggctgatcttgatgaacgccatggatccgcccag
aaagagatccaaatgtctactgagactgagaagagagttaaaaatcttttgaactgcacg
caaagagaagcacccgtgaatgattctggtgcctcatctggccagggggataaccgatca
tcgactggtccgaaaattactaaaccagtgtctacgatagagacagattctgctaaggaa
aaacttagtctggagttaaagcagcggcgggataaaacaatggcaagtgatagtttgaag
gaaatgcaatcttttagggaaaagctccctgcattcaaaatgaaaggcgaatttctgaaa
gctgttgcagaaaatcaggttttagtaatttctggagagacaggttgtggtaaaacaaca
cagctccctcaatatatattggaagaggagataacgcgccttcgcggggctgattgcaac
ataatatgcacgcaaccccgtcgtatatctgccatatctgttgcagctcgaatatcttct
gagaggggtgagaatcttggtgaaactgttggttatcagattcgtctggaggcaaagcgc
tctgctcaaacacatctcctgttttgcaccaccggtgttttactgcggcagttggttcag
gatcctgatttaactggtgtaagccatttgttagtggatgaaattcatgaaagaggcatg
aatgaggactttctattaattattttgcgtgaccttcttcctcggcgtccagatttacgt
cttattctaatgagtgcaaccattaatgctgatttattctcaaaatactttggaaatgcc
ccaaccatgcatataccggggttgactttccctgtgacagagttttttctagaagacata
ttggagaaatctctttacaaaattcaatcagagcctgacaactttcgggggacttcacga
aggagaaggagaagggagcaggattctaagaaagatcctttaactgaattatatgaggat
gttgatattgattctgaatataagaactatagttcatctactcgagtttctcttgaagct
tggtcgggttcccagcttgacttgggtctggttgaggcaacaattgaatatatttgtcgc
catgaagggggtggtgcaattcttgtgtttcttactggctgggatgagatttccaagctg
cttgacagggttaaaggaaacaaacttctgggagaccaaagcaagtttctggtccttcct
ctacatggttcaatgcctaccattaatcaacgtgaaatatttgaccgtcctccccctaat
aagcgaaaaattgttctggcgacaaatattgcagagagcagtatcactatagatgatgtt
gtgtatgttgtagactgcggaaaggccaaggaaaccagttatgatgccctaaacaaactg
gcttgtctattaccatcatggatttcaaaggcttcagcacatcagagacgtggtcgtgct
ggccgtgtgcaacctggagtctgttatagattgtatccaaaaattatccatgacgcaatg
cttcagtatcagttacctgaaattctccgaacaccactgcaagaactatgcctgcacatc
aaaagtttgcagcttggagctgtgggatcatttttggccaaggcacttcagccaccagat
cctctgtctgttcaaaatgctattgaactccttaaaaccattggagctttagatgataat
gaggagcttacccccctgggtcgccacctctgtacattacccctggacccaaacattgga
aagatgctactgatggggtgtgtcttccaatgcctcaatcctgctttaacaatagcttct
gctcttgcgcatcgggatccatttgttcttcctatagaaatgaaaaatgaagctgatgct
gcaaaacaatcctttgccggtgattcttgcagtgaccacatagcacttgttaaagctttt
gaaggatatatggaagcaaaatgcaatcgaaatgaaagagcattttgttgggagaatttt
ttatccccaataacattgaggatgatggaggatatgagagagcagtttcttaaccttcta
tccgatattggttttgtggacaagtccaagggtgccagcgcttacaatcagtacagccat
gatttggagatggtatcagcaatcctttgtgctggactctacccaaatgttgtgcagtgt
aaaagaagaggaaagcggacagcattctacactaaagaagttgggaaagttgatttgcat
cctgcatccgtaaatgcagggattcatctcttccctctgccatacatggtttacagtgaa
aaggtgaaaacaactggcatttttgtccgagactccacgaatatatcagattatgctctg
cttctgtttggtggtaatctcattcccagcaaaaatgggcaaggtattgagatgcttggg
ggttatctacatttttctgcatcaaagagtgtattagaactaataaggaaactgcgggca
gaactggacaagcttctgagtaggaagattgaggaaccaagcttggacatctctttcgag
ggcaaggcagttgtttctgccgttgtcgagttattgcacagttacaacgtacgctattaa
DBGET
integrated database retrieval system
