Ricinus communis (castor bean): 8259846
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Entry
8259846 CDS
T01087
Name
(RefSeq) sm-like protein LSM4 isoform X1
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03018
RNA degradation
rcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8259846
09123 Folding, sorting and degradation
03018 RNA degradation
8259846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8259846
03041 Spliceosome [BR:
rcu03041
]
8259846
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
8259846
mRNA degradation factors
5'-3' decay
Lsm complex
8259846
Spliceosome [BR:
rcu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
8259846
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
8259846
NCBI-ProteinID:
XP_002523061
UniProt:
B9SAP2
LinkDB
All DBs
Position
1:7678428..7693705
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AA seq
147 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRSDRKPPGVGRGRGRGREDGGRPVKGIGRGLDDGS
AKAAGGRGRGGSGGKPGGNRGAGRGRG
NT seq
444 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccctttctcttcttaagactgcacaaggccatcccatgttggttgaacttaaa
aatggagagacttacaatggacatttggtcaattgtgatacttggatgaacattcatctc
cgtgaagtcatctgtacctctaaggatggagatagattttggagaatgcctgaatgctat
atacgcgggaatactattaagtatctccgagtacctgatgaggtgatcgataaagttcag
gaagaaaccaagagccgttcagaccggaagccacctggcgtaggccggggaagaggaaga
ggccgagaagatggtggaaggccagtgaaaggaattgggcgtggtctggatgatggaagt
gctaaggccgcaggtggacggggcagaggtggttcaggtggaaagccaggtggaaacaga
ggcgcagggagaggcaggggctga
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