Ricinus communis (castor bean): 8260236
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Entry
8260236 CDS
T01087
Name
(RefSeq) probable RNA helicase SDE3 isoform X2
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
rcu
Ricinus communis (castor bean)
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8260236
03036 Chromosome and associated proteins [BR:
rcu03036
]
8260236
Enzymes [BR:
rcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
8260236
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
8260236
Chromosome and associated proteins [BR:
rcu03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
8260236
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MOV-10_beta-barrel
AAA_11
Glyco_tranf_2_3
Motif
Other DBs
NCBI-GeneID:
8260236
NCBI-ProteinID:
XP_002530980
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All DBs
Position
6:28445083..28449958
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AA seq
680 aa
AA seq
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MSLFLEILRCVLCCVEDDRYDNYNIPLYRNTSRETRETLIDAPVRYGLIFDSEPSNSTNI
GSAYAKAEYVVTSSNSFIKYAPISSYNQPTPSSRLPKPSPEKLAPSSNRTPSRPKPPISS
CSRSQSPLVPKASSSKPSSPSPTLPTSSIETPQAPSHSLNPSPSVLKITVSCSKPSPSFS
TPASSASKPVNVSPKSPPSSTRPSPSASKAPPSFKPTLVPASSNLKDDQKIAHYILVQKD
ITPIYMIPKDIESLIKSDKVPEVLKKPLSLSTYKDYFAALLYAEDYYIEKWSKFKLVGIT
IKLQETAISKQIYFGKDYETDVKHLVAFEIDSSHEKRPFLLSRDFVFARPSGSTTEPFQG
IIYRVQRSTTVLVEFGEDFHAQHCSFQKYDVSFSFNRVCLRRAHQAIEAASDPSFENFIF
PSWGLRRLSSSSPNLNYINKLDANLNAAVHRIITIMESPPYLLEGPPCVAKVEVKRKECN
SKQLSSTGLIIQQAVFRIYRSSQKYRILICAPINRTCDVLMRSLKEIPESEMFRANAAFR
EIDGVPTDILASSLYKGDCFACPKLQELRKFKIILSTYVSSFQLHNEGIAAGHFSHIFMV
DASSATEPEAMVALANFANEKTTVIVTGAPRNHSGWVRSDLARKNGLMKSYFERLCERTP
YKNLDPNFIMQLVDDSQVRM
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgtctctatttcttgaaatcttgaggtgtgttctttgttgtgttgaagatgatcgatac
gacaattacaatataccactgtatagaaacacttcacgggaaacaagggagacactaatt
gatgcacctgtgagatatggtttaatatttgattcagagccaagtaattcaacaaatatt
ggatcagcatatgctaaggcagaatatgtagttactagttccaatagttttatcaaatat
gcacctatatcttcctataatcaacctacaccttcctctaggctaccaaagccttcacca
gagaaacttgcaccttcttcaaatcgaactccatcaagacctaaacccccaatatcttct
tgtagtcgatcacagtcaccattagtaccaaaagcatcttctagtaaaccatcttcaccg
tctcctacgctcccaacttcatcaatagaaacccctcaagcgccttcacactctttaaat
ccatctccatccgtcctcaagatcacagtatcctgttctaaaccatctccttcattttct
acccctgcatcatctgcttctaaacctgtcaatgtttcacctaaatcacctccgtcctcc
acgaggccttctccatcagcctctaaggcccctccatcttttaagccgactctggttcca
gcttcctcaaacttgaaagatgaccagaaaatagctcattatatactggttcaaaaggat
attacacctatttatatgattcccaaggacatcgagtctttgatcaagagtgacaaggtg
cctgaagttctgaagaagccactatctctgtcaacatacaaggactattttgctgctctt
ctgtatgctgaggactactacattgagaaatggagcaagttcaaattggtgggtatcact
ataaaactgcaagaaacagcaatctctaaacagatatattttggaaaagattatgagaca
gatgtgaaacatttggtggcatttgagattgattcatcgcacgagaaacgaccgtttctt
ttgtcaagggattttgtctttgcaagaccttccggaagcacaactgagcctttccagggc
attatctatcgtgtgcagagaagcactactgtcctagttgaatttggtgaagattttcat
gctcagcactgttcattccaaaaatatgatgttagcttctcatttaacagagtttgttta
agaagggctcatcaagcaattgaagctgcctcagatccttcatttgaaaatttcattttc
cctagttggggattaaggaggctcagctcctcatcaccaaatctcaattacattaataag
cttgatgcgaatctaaatgctgcagttcatcgcatcataaccattatggagtcgccacct
tatcttcttgagggtccaccctgtgtagcaaaagttgaagtaaaaaggaaagaatgtaat
tcaaaacaactatcaagtactggattgattatccaacaagcagtgtttcgaatttatcgg
agctctcaaaagtatcgtattctcatatgtgcacctattaacaggacatgtgatgtactg
atgagaagcttgaaggagatccctgaatctgaaatgtttcgagccaatgcagcatttcgg
gagatagatggtgtacctactgacatccttgcttcaagtctttacaaaggggattgtttt
gcttgtcccaagctgcaggaactccggaaatttaaaataatattgtcaacttatgtgagt
agctttcagctacacaatgaaggcattgctgctggtcattttagtcacatctttatggtg
gatgcatcatctgctactgagccagaggcaatggtggctctggcaaattttgcaaatgag
aagacaactgtaatagtcactggtgccccaagaaaccattcaggatgggttcgctctgat
ctagctcggaagaacgggttgatgaaatcatatttcgaaagactctgtgagagaactcca
tacaagaatcttgatccaaatttcatcatgcagctggtcgatgattctcaagtcagaatg
taa
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