Ricinus communis (castor bean): 8260362
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Entry
8260362 CDS
T01087
Name
(RefSeq) vacuolar protein sorting-associated protein 54, chloroplastic isoform X1
KO
K17600
vacuolar protein sorting-associated protein 54
Organism
rcu
Ricinus communis (castor bean)
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rcu01009
]
8260362
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rcu04131
]
8260362
Protein phosphatases and associated proteins [BR:
rcu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
8260362
Membrane trafficking [BR:
rcu04131
]
Endosome - Golgi transport
Tethering complex
GARP complex
8260362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54
Vps54_N
Motif
Other DBs
NCBI-GeneID:
8260362
NCBI-ProteinID:
XP_015579547
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Position
4:13951635..13967501
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AA seq
1036 aa
AA seq
DB search
MDSKPSHSFQLGRSPTDSPTATTTASSSTLAKSVSDVGIQSLSSILNNPHVGKSGVYSSD
GSWTGWWPSSSSSTSVAQPEFTPLLPKSSELSRSDFKPYLSTIADSYNRFEDIINHNAKQ
NNNSNNNNNLGQGEALVACLREVPSLYFKEDFALEDGATFRAACPFSNVSENVVLQEKLS
QYLDVVELHLVKEISLRSNSFFEAQGQLQDLNVKIVEGCSRIRELKETIRLLDKDLVESA
RNIQELNVSRSNMLALQHKLRVILYVNQALSALKLLVASADCAGALDVTDDLQHLLDGDE
LTGLHCFRHLRDHVSTSIDSINSILSAEFMRAAIHDAGSTDVVIVSKAKSRASSLTNGRD
IDQVKLDEEDTSSFRDRLLPHIVGLLRTAKLPSLLRLYRDTLTTDMKTAIKTAVAELLPV
LVARPLESDFTPGERTVETDGGNLSLGSKLKSLPSESFVQLLSAIFKIVLAHLVRAAEVK
KAIEWIICNLDGHYAADSVAAAIAIGAAAAEAAQESDSQHGSVPQFLPQRSAAKVPSSQA
KANDAATSSNMSRNFRADVLRENAEAVFAACDAAHGRWAKLLGVRALLHPKLRLQEFLSI
YNITQEFITATERIGGRLGYSIRGTLQSQAKAFVDFQHEMRMTKMKAVLDQETWVEVDVP
DEFQVIVTSLFSSEALISGDLDVAQGNMIRGHGEVATTNDGSVIADNEAQNVQQQLMRMD
SSELPPQNSVQVKSPPSSEATESNKADATISSAQSNNTNAKERGKPASQTLTCGGVSYHM
VNCGLILLKMLSEYIDMNNFVPALSSEVIHRVVEILKFFNTRTCQLVLGAGAMQVSGLKS
ITSKHLALASQVVSFTYAIIPEIRRVLFLKVPETRKALLLLEIDRVAQDYKVHRDEIHTK
LVQIMRERLLVHLRGLPQIVESWNRPEDTDAQPSQFARSLTKEVGYLQRVLSRTLHEVDV
QVIFRQVVVIFHSQISEAFSRLEISTPQAKDRLRRDVEHILRCIRSLPTDNLSKSGTPNW
GQLDEFLVQKFGAETG
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggattcgaaaccttcccattcattccaattgggaaggtcaccaaccgattcaccaaca
gcaacaacaacagcatcttcgtcaactttagctaaatcagtctccgatgtcggaatccaa
agcctttcttcaattctcaacaatccacacgtcggtaagtccggtgtttactcctctgac
ggatcttggaccggctggtggccctcctcctcctcctccacttccgtcgctcagccggaa
ttcactcccttactccctaaatcgtcggaattatcaagatcagatttcaaaccctaccta
tcaacaatcgctgattcatacaaccgtttcgaagacattataaatcacaacgcgaaacaa
aataataatagtaataacaataacaatttaggtcaaggtgaagcacttgtagcgtgttta
cgggaagtgccatcactttattttaaagaagattttgcattagaagacggagcgacgttt
cgagcggcgtgtccattttctaatgtgtcggagaatgtggttttgcaagagaagctatcg
cagtatttggatgttgtcgagttacatttggtgaaggagatttcgctgcggtccaattcg
tttttcgaagcgcaaggacagttgcaagatcttaatgtgaagattgtagaagggtgtagt
aggattagggaattgaaggagactattaggcttttggataaggatctagttgagtctgcc
aggaatattcaggagttgaatgttagtagaagtaatatgttggctttgcagcataagttg
agggttattttatatgttaatcaagccctttctgctctcaaattgcttgttgcatctgca
gattgtgctggagctttggatgtcactgatgatttgcaacatctattggatggagatgag
ctgactggtctacattgctttcgtcaccttcgggatcacgtgtcaacttcaatagattcc
ataaatagtattctctcagcagagtttatgcgtgctgcgatacatgatgctgggagtact
gatgtggttatagtatctaaagccaaatccagggcttccagtttaactaatggaagagat
attgatcaggttaagttggatgaagaggatacgtcgagttttcgtgatcgtctcctccct
cacattgttgggttgcttagaacagctaagctcccttctttgttgagattatatcgtgat
acacttaccaccgacatgaaaacagctattaaaactgcagttgcggagctgcttcctgtt
cttgtggcacgacctctagagtcagatttcacccctggagagcgaacagtagagacagat
ggtggaaatctatctcttggaagcaagctaaagagcttgccatctgaaagttttgttcaa
cttctaagcgctattttcaagattgtactggcacatttagtgcgggctgctgaagtgaaa
aaggcaattgaatggattatatgtaaccttgatggacactatgctgctgattcagttgca
gctgcaatcgcaattggtgctgcagctgctgaagcagctcaagagagtgacagtcagcat
ggttcagttccccaatttttgcctcaaagaagtgctgccaaggtcccatcatctcaggcc
aaagcaaatgatgcagcaacttcctcgaatatgtctagaaatttcagggctgatgtgtta
cgagagaatgcggaagctgtctttgctgcttgtgatgcagctcatggaagatgggcaaag
ctccttggagtccgcgctctccttcatcctaagttgagattacaggagtttttgagcatt
tacaacatcactcaagagttcattactgctactgagaggataggtggaaggttagggtac
agtattcgaggcacactgcagtctcaggccaaggcttttgttgatttccagcatgaaatg
cgaatgacaaaaatgaaggcagtgcttgatcaagagacatgggtggaagttgatgtccct
gatgaatttcaggtcatagttacatcactgttttcttctgaggcattgatatctggggac
ttagatgttgctcaaggtaacatgatcagaggccatggtgaagtcgccacaaccaatgat
ggttcagttattgctgacaatgaagcacaaaatgttcaacagcaacttatgaggatggac
tctagtgaattacccccgcaaaattctgtgcaagtgaaatctcctccttcatctgaagca
acagaaagcaataaagccgatgctacaatctcttctgcccagagcaacaatactaatgct
aaggagcgtggaaaacctgcctctcaaacgcttacctgtggaggtgttagttatcacatg
gtaaactgtggcttaatattgctgaagatgttgtcggagtacattgatatgaataatttt
gtaccagcactttcttcggaagttattcatcgtgttgtagagatattaaaattcttcaat
acaagaacctgtcagcttgttcttggagctggtgccatgcaggtgtctggattgaagtct
attacttctaagcacttggcccttgcaagtcaagttgttagctttacatatgctattatt
cctgaaatcaggcgtgttcttttccttaaagtacccgagacaagaaaggcattgctgctt
cttgagattgatcgtgtagcacaggattacaaggttcaccgagatgaaatacacacaaag
ctggttcagataatgagagaaaggctgttggttcatttacgtggtttgcctcaaattgtt
gagagctggaacagacctgaagatactgatgcacagcccagtcaatttgcccgatctctt
acaaaggaggttggataccttcaacgtgtcttgtctcggactttacatgaggtggatgtt
caagtgatttttaggcaagtggtcgtaatttttcattcacaaatctcagaagcattttca
cggttggagatcagcactccacaagcgaaggacaggctgcgccgggatgtcgaacacata
cttagatgcattagatcattacctactgataacttgagtaagtctggtacccccaattgg
gggcaacttgatgaattcttggtacaaaagtttggagctgaaactggttaa
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