Ricinus communis (castor bean): 8260774
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Entry
8260774 CDS
T01087
Name
(RefSeq) sm-like protein LSM7 isoform X2
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03018
RNA degradation
rcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8260774
09123 Folding, sorting and degradation
03018 RNA degradation
8260774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8260774
03041 Spliceosome [BR:
rcu03041
]
8260774
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
8260774
mRNA degradation factors
5'-3' decay
Lsm complex
8260774
Spliceosome [BR:
rcu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
8260774
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Hfq
RimP_C
Motif
Other DBs
NCBI-GeneID:
8260774
NCBI-ProteinID:
XP_002513176
UniProt:
A0ACK6AY76
LinkDB
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Position
6:complement(12055397..12058367)
Genome browser
AA seq
99 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEYLRDPDDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQQDGA
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggaggaaagaaacagtactggatttggcaaagtttgtggacaagggtgttcaa
gtcaagctcactggtggtagacaagtcacagggactctgaagggatatgatcaattgcta
aaccttgtcctggatgaagctgtggaatatctaagagaccctgatgatcctttgaagaca
actgatcagaccaggcgccttggactaatagtatgtaggggaactgcagtgatgcttgta
tctccaaccgatggtacagatgaaatcgctaacccttttatccagcaagatggggcttag
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