KEGG   Ricinus communis (castor bean): 8260774
Entry
8260774           CDS       T01087                                 
Name
(RefSeq) sm-like protein LSM7 isoform X2
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
rcu  Ricinus communis (castor bean)
Pathway
rcu03018  RNA degradation
rcu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rcu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    8260774
  09123 Folding, sorting and degradation
   03018 RNA degradation
    8260774
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rcu03019]
    8260774
   03041 Spliceosome [BR:rcu03041]
    8260774
Messenger RNA biogenesis [BR:rcu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     8260774
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     8260774
Spliceosome [BR:rcu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    8260774
SSDB
Motif
Pfam: LSM Hfq RimP_C
Other DBs
NCBI-GeneID: 8260774
NCBI-ProteinID: XP_002513176
UniProt: A0ACK6AY76
LinkDB
Position
6:complement(12055397..12058367)
AA seq 99 aa
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEYLRDPDDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQQDGA
NT seq 300 nt   +upstreamnt  +downstreamnt
atgtcagggaggaaagaaacagtactggatttggcaaagtttgtggacaagggtgttcaa
gtcaagctcactggtggtagacaagtcacagggactctgaagggatatgatcaattgcta
aaccttgtcctggatgaagctgtggaatatctaagagaccctgatgatcctttgaagaca
actgatcagaccaggcgccttggactaatagtatgtaggggaactgcagtgatgcttgta
tctccaaccgatggtacagatgaaatcgctaacccttttatccagcaagatggggcttag

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