Ricinus communis (castor bean): 8261850
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Entry
8261850 CDS
T01087
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8261850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8261850
03036 Chromosome and associated proteins [BR:
rcu03036
]
8261850
Enzymes [BR:
rcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
8261850
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
8261850
mRNA degradation factors
5'-3' decay
Decapping complex
8261850
Chromosome and associated proteins [BR:
rcu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
8261850
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
TFIIA
Mdt30
Motif
Other DBs
NCBI-GeneID:
8261850
NCBI-ProteinID:
XP_002511831
UniProt:
B9RDP2
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All DBs
Position
1:1794851..1800234
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AA seq
507 aa
AA seq
DB search
MNNNNNNNNNRGRYPPGIGAGRGAGMNANPSFQSRVPQQQYVQRNMMQNHHQQFQHQQHH
QHHLQQQQQQQQQQQQWLRRSQLPPADSSVDEVEKTVQSEAVDSTSQDWKARLKIPPPDT
RYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNG
TGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTS
LKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSVEQLI
RFLPPTRQILMFSATFPVTVKDFKDRFLQKPYVINLMDELTLKGITQFYAFVEERQKVHC
LNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGA
CRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRF
NLYRIEQELGTEIKQIPPHIDQAIYCR
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacaacaacaacaacaataacaatagagggcggtatccgccaggaattggcgcc
ggaagaggcgcaggtatgaacgcgaaccccagttttcaatcaagggttccgcaacagcag
tatgttcagagaaatatgatgcagaatcaccatcagcagttccaacatcagcaacatcat
caacatcatcttcagcagcaacagcagcagcagcaacagcagcagcagtggttaagaagg
agccaactacctcctgcagattccagcgttgacgaggtggaaaagaccgttcagtccgag
gctgtggactccacttcacaagattggaaggccaggctaaagataccaccacctgataca
cgctacaaaacagaggatgtcacagccacaaaaggaaatgaatttgaggactattttctg
aaacgagaactgcttatgggaatttacgagaaggggtttgaaagaccttctcctattcag
gaagagagcattccaattgctcttactggtagcgacattcttgctagagctaaaaatggc
actgggaaaacagcagcattttgcattcctgccttggaaaaaattgaccaagataacaat
gttattcaagttgttatacttgttccaacaagggagttggctcttcaaacatcacaagtt
tgtaaggagcttgggaagcatttgaaaattcaagtaatggttaccacaggtggtacaagt
ctaaaagatgacataatgcgtttatatcaaccggtccatttattagttgggactcctgga
agaatactagatcttgcaaaaaagggtgtttgcgttttgaaagattgttcaatgcttgtt
atggatgaggccgataagcttttgtctcctgaatttcaaccttctgtggagcagctgatt
cgttttcttcctccaactcgtcagattttgatgttttctgcaacatttcctgttactgtt
aaggacttcaaggatagattcttgcagaagccttatgttatcaatcttatggatgagctt
acccttaagggtattacacaattttatgcttttgtcgaagaacggcagaaagtccattgt
ctaaatactcttttctctaagcttcaaataaatcaatcgatcattttctgcaattcggtg
aatcgggtagaactgttggcaaagaagatcacagagcttggctattcttgcttttatatt
cacgcaaagatgttacaagatcatcgcaacagagtctttcatgatttccgcaatggtgca
tgccggaatcttgtttgcactgatttatttactaggggtatagacatccaagcagttaat
gtggttatcaactttgatttccccaagaattctgagacctatcttcacagggttggtcga
tcaggaaggtttggacaccttggtttggctgtcaatctgattacctatgaagaccgcttt
aacttgtataggattgagcaagaactcggaactgaaattaagcaaattcctccacatatt
gatcaggcaatatattgccggtaa
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