Ricinus communis (castor bean): 8262570
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Entry
8262570 CDS
T01087
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8262570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8262570
03041 Spliceosome [BR:
rcu03041
]
8262570
03009 Ribosome biogenesis [BR:
rcu03009
]
8262570
03016 Transfer RNA biogenesis [BR:
rcu03016
]
8262570
Enzymes [BR:
rcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
8262570
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
8262570
Spliceosome [BR:
rcu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
8262570
Complex C
U4/U6.U5 tri-SnRNP related factors
8262570
Ribosome biogenesis [BR:
rcu03009
]
Eukaryotic type
Pre-60S particles
Helicases
8262570
Transfer RNA biogenesis [BR:
rcu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
8262570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
8262570
NCBI-ProteinID:
XP_015580057
UniProt:
B9SPB9
LinkDB
All DBs
Position
6:16995060..17005541
Genome browser
AA seq
991 aa
AA seq
DB search
MALLKRKSVEYPSGESLPPQKQQRENGMATADEPVACLHDVSYPENSVPPPRLDSSVQKD
LKPAKEFPFTLDPFQSEAIKCLNNGESVMVSAHTSAGKTVVALYAIAMSLRNQQRVIYTS
PIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEITREVAWV
IFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYT
DYRPTPLQHYIFPAGADGLYLVVDEKGKFREDSFQKAVNALVPKSEGEKKRENGKWQKGL
VMGKLGEESDIFKMVKMIIERQYDPVILFSFSKRECEFLAMQMAKMDLNEDDEKVNIETI
FWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATE
TFSIGLNMPAKTVVFSNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDERGICILMVDEKL
EPSTAKMMLKGSADSLNSAFHLSYNMLLNQMRCEDGDPENLLRNSFYQFQADRAIPDLEK
QVKVLEDERNSMIIEEEDSLKNYYDLIQQYKSLKKDARDIVFSPKYCLPFLQPGRIVCIQ
CSGVDENSPSFSVEDHVTWGVVISFDRVKSFSEDDASRKPEDSNYTVDVLTRCVVSRDGV
AEKSFKIVPLKEPGEPLVVSIPVSEITSLSSARLYMAKDLLPLEVRENTLKQVIEFLSRK
PTGLPLDPEADMKIKSSSYKKAVRRIEALENLFEKHEIAKSPLIDQKLKVLHKKQELTAK
IKSVKKTLRSSTALAFKDELKARKRVLRRLGYVTSDDVLELKGKVACEISSADELTLTEL
MFNGVLKDIKVEEMVSLLSCFVWQEKLQDAGKPREELDMLFTQLQDTARRVAKLQLECKV
QIDVEDFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLIQAA
KSIGETELEAKFEEAVSKIKRDIVFAASLYL
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggcgttgctgaagagaaagtcagttgaatatccatctggggagtcactccctcctcaa
aaacagcagagagagaatggtatggcaactgctgatgagccggttgcctgcttacatgat
gtgtcatatccagagaattctgtgccacctcctcgcttggattcctcagttcaaaaggac
ttgaagccagcaaaagaattcccatttactcttgacccttttcagtctgaagctattaag
tgcctcaataatggcgagtctgtcatggtctcagcacatacatcagctggaaaaactgtg
gtagctttatatgctattgcaatgtctctgagaaatcagcagcgcgtcatatacacttca
cccattaaggcacttagcaatcaaaaatatagggagttcaaggaagaattctcagatgta
ggtttgatgacaggagatgtcacaattgagcctaatgcttcttgcttggtgatgacaaca
gaaatctggcgcagtatgcaatataaaggatctgaaattactcgtgaggtagcttgggta
atttttgatgaagtacattatatgcgtgatcgagaaagaggtgtggtatgggaagaaagc
attgttatggccccaaaaaattcccgatttgtgttcctttctgcaactgtgcctaatgca
aaagaatttgctgattgggtggcaaaggttcaccaacaaccttgtcacatcgtttatact
gattatcgaccaacgccccttcagcattatatttttcctgccggagctgacggtttatac
ctagtggtggatgaaaagggaaaatttcgagaggacagctttcaaaaagcagtgaatgca
ctagttccaaagagtgagggtgagaagaaaagggagaatgggaagtggcagaaaggttta
gtaatggggaaacttggagaagaaagtgacatctttaagatggttaaaatgatcattgaa
cgccaatatgatccggtcattcttttcagctttagcaaaagagaatgtgaatttcttgcc
atgcagatggcaaaaatggatctaaacgaggatgatgagaaagtgaacatagaaaccatt
ttttggagtgccatggacatgctttcagatgatgacaaaaaactacctcaggtttcaaat
atgttacccctcttaaagcggggaataggtgtgcaccattctggcttgcttcccattcta
aaagaagtgattgagattttgtttcaagaagggttgatcaagtgtctatttgctacagag
accttcagcataggtttgaacatgcctgcaaaaactgtggtgttcagcaatgttcgtaaa
tttgatggggacaagttcagatggttatctagtggtgagtacatacaaatgagcggacgt
gctggtcgtcgaggaattgatgaacgtgggatatgcatccttatggtggatgagaaactt
gagccttccacagctaaaatgatgcttaaaggaagtgctgacagtttgaacagtgccttc
catttaagctacaacatgcttttaaatcagatgcgctgtgaagatggggatcctgaaaat
ttactacgcaattcattctatcagttccaagctgatcgtgccattcctgatcttgagaaa
caagtgaaagtcctagaagatgaaaggaactcaatgataattgaagaagaagatagtcta
aagaattattatgatctgattcagcaatataaaagtttgaagaaagacgctcgtgatata
gtgttttctccaaagtactgcttaccttttctgcagccaggcagaattgtatgcatccag
tgcagtggggttgatgaaaactccccatctttctctgttgaagaccacgtaacatgggga
gtagtaatcagttttgaccgagtcaaaagcttttctgaagatgatgcaagtagaaaacct
gaagattcgaactacacagtggatgttcttacaagatgtgttgtgagcagagatggagtt
gccgaaaaaagcttcaagattgttccgctgaaagagcctggagagcctcttgtggtttct
attcctgtctctgagattactagtctgagtagtgcgcgcttgtacatggcaaaggacctt
ttgccattggaagtacgagagaacaccctaaagcaggttatagaatttctttctagaaaa
cctactggattgccactagatcctgaagcagacatgaagattaaaagtagctcatacaaa
aaggcggtccggcgaatagaggctttagagaacctctttgaaaagcatgaaattgcaaaa
tctccccttattgatcaaaaactgaaagttttacacaagaagcaagaattaacagctaag
attaagtcagtcaagaaaactctgcgttcttccactgccttggcatttaaagatgagctt
aaggccagaaaaagagttcttcgaaggctcggatatgtgacaagtgatgatgtactggag
ttgaaagggaaagttgcttgtgaaattagtagtgccgatgagttgaccctgacagagctt
atgttcaatggtgtcttaaaggacataaaggttgaggagatggtatctcttctttcatgt
tttgtgtggcaagagaagctgcaggatgctggaaaacctagggaagaacttgacatgctt
tttacacaattacaagatacagctcgaagagttgctaaacttcagcttgaatgcaaggtc
caaattgatgtggaggattttgtaagttcatttcggcctgatatcatggaagctgtatat
gcttgggcaaagggatccaaattctatgaaatcatggaaattacacaggtttttgagggg
agcttgatcagggcaattaggagattggaagaagttcttcagcagcttatacaggcagca
aagtctattggtgaaacagagctggaggcgaaatttgaagaggctgtttccaagattaag
agggacatagtgtttgcagcgtctttatacttgtag
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