Ricinus communis (castor bean): 8262654
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Entry
8262654 CDS
T01087
Name
(RefSeq) cleavage stimulation factor subunit 77 isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
8262654
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8262654
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
8262654
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
TPR_15
TPR_16
TPR_2
TPR_CcmH_CycH
DUF1993
Motif
Other DBs
NCBI-GeneID:
8262654
NCBI-ProteinID:
XP_002519397
UniProt:
B9S078
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All DBs
Position
3:3619070..3644901
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AA seq
767 aa
AA seq
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MENPDGANATKDQTTDAAAAVVDKYNVEAADVLANSAQHLPITQAAPIYEQLLSLFPTAA
KFWKQYVEAYMAVNNDDATRQIFSRCLLNCLQVPLWRCYIRFIRKVNDRKGVEGQEETRK
AFDFMLGYVGADIAAGPVWMEYITFLKSLPALNAQEESQRMTAVRKVYQKAIVTPTHHVE
QLWKDYENFENSVSRQLAKGLISEYQPKYNSARAVYRERKKYVDDIDWNLLAVPPTGSYK
EELQWMAWKRFLAFEKGNPQRIDSVSSNKRIIFTYEQCLMYLYHYPDIWYDYATWHAKGG
SIDAAIKVFQRALKALPDSEMLKYAYAELEESRGAIQPAKKIYETLLGDGVNATALAHIQ
FIRFLRRNEGVEAARKYFLDARKSPNCTYHVYVAYALMAFCLDKDPKMAHNVFEAGLKRF
MHEPVYILEYADFLSRLNDDKNIRALFERALSSLPPEESVEVWKRFTQFEQTYGDLASML
KVEQRRKEALSRTGEDGASALEGSLQDVASRYSFMDLWPCSSKDLDHLARQEWLAKNISK
KMEKSTISNGLGILDRVSTGLKSNSAVSAKVIYPDTSSMAIYEPRQKHEVGISLSTTATG
FGSASNPSSNTIVGLVGSGANAFDEILKATPPALISFLSTLPTVEGPTPNVDIVLSICLQ
SELTNGQMGKLGTSPAVPAPPAPATSDLSGSSKSRPVLKPSRDRQSGKRKDIERQEEDET
ATVQSQPLPRDIFRIRHSQKARVGTASQTGSASYGSALSGDLSGSTS
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atggagaatcctgacggagctaatgcgacaaaggatcaaacaactgatgctgctgctgct
gtggttgataagtacaatgtcgaagccgccgatgttctagccaatagtgcccagcatttg
ccaattacccaggcagcacctatatatgagcaacttctctccttgtttcctacagctgca
aaattttggaagcagtatgtagaggcatatatggctgtaaacaatgatgatgctacaagg
cagatatttagccggtgtttattgaactgtctccaagttcctctttggcgctgctatatt
cgattcattagaaaagtcaatgacagaaagggtgtagagggccaagaagaaacgagaaaa
gcttttgattttatgctcggttatgtaggagcagacatagcagctgggcctgtatggatg
gagtacataacctttctaaagtcactaccggctctaaatgcacaggaagagtcccaacgg
atgactgctgtacggaaagtataccaaaaagctattgttactcctacccatcatgttgag
caactctggaaggattatgaaaattttgaaaactcagttagccgacaattggccaaagga
ttgatatctgaatatcaaccaaaatataacagtgcaagggctgtctatagggagcgaaag
aaatatgttgatgacattgattggaatttgcttgctgttccaccaactggctcttataag
gaagaactgcaatggatggcttggaaaagatttttagcttttgaaaaaggaaacccccaa
agaatagacagtgtatcctccaataagagaattatattcacctatgaacagtgcctgatg
tatttgtaccattatcctgacatatggtatgactatgctacttggcacgcaaaaggtggc
tctattgatgctgcaatcaaagtatttcagcgggctttaaaggctcttccagattcagaa
atgctgaagtatgcttatgctgaattggaggaatcccgtggagcaatccagcctgcaaaa
aaaatatatgaaactcttttgggtgatggcgttaatgcaacagcactagcacatatacaa
tttattcgctttctaagaaggaatgaaggggtagaagcagctcgcaagtacttcctagat
gctcgcaaatccccaaactgtacatatcatgtgtatgttgcatatgctttaatggcgttt
tgcctcgacaaggatccaaagatggcacacaatgtttttgaagcaggactaaaacgattt
atgcatgagcctgtatatattctagagtatgcagatttcttgtctcgtttgaatgatgac
aaaaacatccgggctttatttgagagggcgttaagctcgctgccaccagaggaatctgtt
gaagtctggaaacgatttacccagtttgagcaaacatatggagatctagctagcatgttg
aaggttgagcaacgaagaaaagaagctctttcaagaacaggtgaagatggtgcatcagcc
ttagagggttctttacaagatgttgcctcacggtacagtttcatggatctttggccatgc
tcgtcgaaggacttggatcacttagcccgacaagagtggcttgctaaaaatattagtaag
aaaatggagaaatctactatttctaatggactgggaatcttagacagggttagtacaggt
ctgaaaagcaattcagctgtatcagcaaaagttatttatccagatacttcttctatggcg
atttatgagccaaggcaaaagcatgaggttggaatttctttaagcacaacagcaactgga
tttgggagtgcttccaacccgtcatccaataccattgttgggttggtgggttctggagca
aatgcatttgatgaaattttgaaagcaacaccacccgctttaatatcatttttatcaacc
ttgcctacagttgaaggtccaacaccaaatgtagatattgtactatcaatatgtttgcag
agtgaactgacgaatgggcagatgggtaagttagggacatcccctgctgtaccagcccct
ccagctccagctacaagtgacctttctggttcaagcaagtctcgtccggttctcaaacct
tcaagggatagacaatctggaaaacggaaggatatagagaggcaagaggaagatgaaact
gcaactgtacaaagccagccattgcctagagatatttttagaataagacacagtcaaaaa
gcacgcgtgggcactgcttcacaaacaggatcagcatcatatggaagtgcactttctgga
gatctatctggtagcactagctaa
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