Ricinus communis (castor bean): 8263496
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Entry
8263496 CDS
T01087
Name
(RefSeq) uncharacterized protein LOC8263496 isoform X1
KO
K24155
rabconnectin-3a
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
8263496
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rcu04131
]
8263496
Membrane trafficking [BR:
rcu04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
8263496
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
8263496
RAVE complex
8263496
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_EML
WDR55
Beta-prop_EML_2
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
EIF3I
Motif
Other DBs
NCBI-GeneID:
8263496
NCBI-ProteinID:
XP_048236340
LinkDB
All DBs
Position
1:10419905..10434467
Genome browser
AA seq
2526 aa
AA seq
DB search
MPEASSSISTINPIDHLPLSIIGSEIIPPAPTRSESTIDWLPDFSGYAWIAYGASSLLVI
SHLPSPMSSDEFLIGPILRQVFELSGDHSSAVTSVSWSSVTPSIGELAAASNNCIYVFSH
DSGSSKGSFCWSQNAVLVQSTKVEAIKWTGSGDGIISGGIDVVLWRRRNRSSWEIAWKFK
RDEPQNLVSATWSIEGPSAAANAYPSKLHAKRSSDESKSVLVCYGNSISEYEKCELCHPQ
PVSMVQWRPLTINQSRRDVKHSPRHMLLTCCLDGTARLWTEIDNGKVKKLGKDNSDHKTR
KSFCVAAVIEINQVLSGSLGIDMVLNWATEHAGVYRTGEGSNISTERYGHDWVGKCDWLI
GFGPGTVITFWVIHCLDDISPVRFPRVTLWKRQELQDLEGGHLGGAGFSKFKDSILLNKV
LISRNCLSSPPDECSLVHLLHCNSSVWSLLHIQKSGDMEDRSSDKYLTSSANGVSCGGHT
RKILQVALHPYIYELALAASLDSDGLLIFWSVSTLNKLGLSTLISTWKFCGKFVTCDSFC
KYTSLKWAPSMLDEDRVLFMGHVGGIDCFIVKISQKGGDVICHHACTIPLTGHNAYEDGP
RDIFVIPLPSTCNKTFKYNKFMLLGIWMNAFQALSWEVTLHCFDLQRSSCKCNFDYQNSS
ESCAWKFENTFANKRYCLSVNPCSSQLPEPYSYDQITSFSVIGPGYLSPMQEGLGLDKDT
SCNFPAYIMATGCFDGTLRMWRSNSSKLPTPAILWELVGNFVAHEGPVTAIRLTDCGRKI
ATLSAGSNMDGSSILHIWDSVHLIGAGSFVLEAILSIDGDVVALNWLTLGNGQFCLGVCM
QNELRVYAQQRSVGQTLVNLGKSLNGENWFCIAVAHTLPAIRDLLWGSQAAAVIIHDSYY
SVLSQWLFFVDNKHPVKCHANSVVVDCEGGKGTDILSSIFTDCDIANSQLREKSFLMKAN
KNNEYLSSSLSVVMAQLRQGSDKRFGFWSLVEIAEKLRGMLPVYHPEALLMNIYSGNWKC
AYAAVRHLAEYLTSGYASERRCSSGKNSFIAPQIHLSSYFEGLLSRDSTVKEFKWRADVN
LPASSSQFFVHGTNFDASNNIFPSSTTASELHGFVEPVEKMYDLAALTNVEKLQILAIID
LLTEIQQSASAYENLDEPGRRFWVALRFQQLYFCRRSGRSSSVEELVVDTRLMSWAFHSD
CQETLLGSFLPNEPSWKEMQALGVGFWFTNNAQLRTRMEKLARMQYLRNRDPKDCALLYV
ALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQEEKNKAAALKNAYVLMGRHQLGLAIAFF
LLGGDNYSAITVCAKNLGDEQLALVICRLIEGRGGPLEHHLITKFALPSATERGDYWLAS
LLKWELGNYFESFLTMLGFPKNCVLGKSALSSNNAAFMDPHIGLHCLILANKYCMRNAIG
ERNAAILGRWATYMAATAFNRSGLPLEALECLSSSSSNSGNIDQGSISDVDGSQILHVIL
KPSASDSVNWLSRNVALHLESCAKLDLALQYFSKLMGEHPSWPDTIIGSVQLSSHVKDCE
VHQFKKLLENFQEKLYTGISKFEQKFLVVSSCLIKMILVWLHNNGSLFTGYDILFGYTSQ
YHLQDESRSVGNSVLYPLLHKTLLESVQDISLLLSRFIVSCSINSLQPFENNETVETRSW
SDTQGHYFQGIMSMLWSLRTAVRSVSGLSSEDVTARSLVLLDLFEFYVHFASAWLQRNSK
GLLLMVQPLLITCTNGHTPYEVDITNLKNILYHIAELLGSNLSVNDTGVGHIVANCMPST
QDRETMHSFSEDEKWHVIGTCLWQHLSRLLKHKLHLLSINIEDDCFSGVSHGLISSWPSG
SIGSDDTMKKEIMSFSLILAKLLKITILHVSSYHVKIFGSLLQLKVENELHMTTLTWLKD
SIASQAEVLYQDASADIMNSKDELSTFDILWDTCADPNIVSEGFALEKINWSEFFNRRSS
QSWSKFYKIIRGEYETREGLDHEVRLSTNRSSDEVESPGKGLFKNGRAVLTTWQKDATIS
KEETLFQNAKEIYKRDGELLEALCVNSVNEGQAAIASNRKGIIFFSWKDGVTFVDKSEYI
WADADWPPNGWAGAESTPVPTSVSPGVGLGSKKGSHLGLGGATLGTGSLARPRRDLTGGG
AFGIPGYAGIGASGLGWEVQEDFEEFLDPPATVETISTRAFSSHPSRSFFLVGSSNTHIY
LWEFGNNKATATYGVLPAANVPPPYALASVSALQFDPCGHRFASAALDGTVCTWQLEVGG
RSNIHPTESSLCFNGYASDVTYVTSSGSVVAAAGYSANGVNAVVWDTLAPPTTSQASIIC
HEGGARSISMFDNDIGSGSVSPLIVTGGKGGDVGLHDFRYIATGRTKRHKHFDNRDRSSN
LPSNPDLQAGAGDKVGGQNQNGMLWYIPKAHLGSVTKISTIPHTSLFLTGSKDGDVKLWD
AKAAQLVYHWPKLHERRTFLQPSSRGFGGVVRPAVTDIQVVSHGFLTCGWDGSVKLVQLK
DHQHET
NT seq
7581 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaagcaagctcttcgatctccactatcaaccccattgatcatctccctctctct
attattggatccgaaattattccacctgctccaaccagatccgaatctaccatcgactgg
ctaccagatttttccggttacgcatggatcgcgtatggagcctcttctcttctggtgatt
tcccaccttccatcccctatgtcctccgacgagttcctgatcggccccattctccggcaa
gttttcgagctctccggcgaccactcgtctgccgtaacttccgtctcatggtcttcagtg
acgccgtcaataggagagcttgctgctgcttcaaataactgcatttatgtattctcacat
gattctggaagctccaaaggttctttttgttggagtcagaatgcagtgcttgtacaatct
acaaaggtggaagcaatcaaatggactggctctggggatggaataatttctggtggaatt
gatgttgttttgtggagaaggagaaacaggtcatcatgggaaatagcttggaagtttaaa
cgagatgagcctcaaaatctggtttctgcaacttggtcaattgagggaccttcagcagct
gccaatgcctatccaagtaaactacatgctaaaagatctagtgatgagagcaagagtgtg
cttgtatgttatgggaacagtatatctgaatatgaaaagtgtgagctgtgtcatcctcag
ccagtgtcaatggttcagtggaggccattaacaataaatcaatcacgtagagatgtgaaa
cattctccaaggcacatgctactaacttgctgccttgatggaactgcgaggttatggact
gaaatagacaatggaaaggttaagaaactgggcaaggacaacagtgatcacaaaacaaga
aaatccttttgtgttgctgctgtaattgagattaaccaggtcttgagtggaagtttaggc
attgatatggttttgaactgggcaacagaacatgcaggtgtatatagaactggagaaggc
agtaacatctccactgaaagatatgggcatgattgggttggcaaatgtgactggttaatt
gggtttggaccaggaacagtgattactttttgggtcatccactgtcttgatgatatctca
cccgtgaggttcccccgtgttacactatggaaaagacaagaactgcaggatcttgaaggg
gggcatcttggtggagctggtttttcaaaatttaaggactccattcttcttaacaaggtc
cttatttcgaggaattgcttgtctagtccacctgatgaatgctctttggttcatttatta
cattgtaattcctcggtctggtctctgttacatatccaaaaatctggtgatatggaggac
agatcctcagacaagtacttaacatcttctgctaatggtgtttcatgtggaggacatact
agaaaaatcctacaggttgctttgcatccttatatttatgagcttgcattggctgcttct
ttggattctgatgggttgcttattttttggtcagtttcgactctcaacaagttgggcctt
tcaacattgatttccacgtggaagttttgtggaaagtttgttacttgtgattcattctgt
aagtatacgagcttgaagtgggcaccttctatgttggatgaagaccgtgtactttttatg
ggacatgttggaggaatagattgctttatagttaagatttctcaaaagggaggggacgta
atatgtcaccatgcatgcaccatacctttaactggtcacaatgcttatgaggatggtccc
cgagatatctttgtgataccccttccttctacctgtaacaagacttttaagtacaataaa
tttatgcttttggggatatggatgaatgcctttcaggctctgtcatgggaagttactcta
cactgttttgacttgcaaaggagttcttgtaaatgtaattttgattatcaaaatagttct
gagtcctgtgcatggaaatttgaaaatacttttgctaataaaagatactgtcttagtgtt
aacccgtgctcatctcagttgccagagccatactcttatgaccagattactagtttttct
gtgataggcccgggatatttatctcctatgcaagaagggctaggtttagataaagataca
tcctgcaactttcctgcatatattatggctacagggtgctttgatggtaccttgagaatg
tggagaagtaactcttctaaactgccaactcctgccattctgtgggagcttgtgggtaac
tttgttgcacatgaaggccctgttactgctatacgtttgactgattgtggtcggaagatt
gcgacactctctgcagggagtaatatggatggctctagcattcttcatatatgggacagt
gtacatcttattggagctggaagttttgtgttagaggctatattatctattgatggagat
gttgttgctttaaattggttaactttaggtaatggtcagttctgtcttggagtgtgcatg
cagaatgagttacgagtgtatgctcagcagcgttctgtaggccagacattagtgaacctt
ggaaaatcgttgaatggggaaaactggttttgcattgcagttgctcatactctccctgct
attcgtgacttgctttggggctcacaggctgcagctgtcattattcatgatagttactat
agtgtacttagtcagtggttgttttttgtagataacaagcacccagtcaaatgtcatgca
aattctgtcgtggtggactgtgaaggtggaaagggcacggacattctttcatcaatattc
actgattgtgacattgccaacagccaactcagagaaaaatcatttcttatgaaggctaat
aaaaataatgagtacctatcaagtagtttgtctgtagtcatggctcaactgagacaaggt
tcagataaaaggtttggtttctggagcctggtcgaaatagctgagaaactaaggggaatg
ttacctgtttatcatcctgaggcactccttatgaatatatattcaggcaattggaaatgt
gcatatgcagctgtgaggcatcttgctgaatatcttacctctggttatgcttctgagaga
agatgcagctctggaaagaatagctttattgctccacagattcatttgtcgagttatttt
gaaggacttctctccagagattcaactgttaaagagtttaaatggagggctgatgttaac
ttacctgcttcatcttcacaattttttgtccatgggactaattttgatgcttccaataat
atatttccttcatctacaacagcatctgagcttcatggtttcgtagagcctgttgagaag
atgtatgatttagcagctttaaccaatgttgagaagttgcaaattcttgcaatcatagat
cttctcaccgaaattcagcaatctgcttctgcctatgaaaatcttgatgaacctgggcga
aggttttgggtggcattaaggtttcagcaattatatttttgtcgaaggtctggtagatca
tcttctgtggaagaattggttgttgacactagactaatgagctgggccttccattctgat
tgtcaggaaactttgttgggttcttttcttccaaatgaaccatcatggaaagaaatgcag
gctcttggtgttggattctggtttaccaacaatgcacaactacgcacaaggatggagaaa
ttggcgagaatgcaatatctaagaaacagagatcctaaggattgcgcccttctatacgtt
gcattgaatcgaattcaagtcttggctggtctttttaaaatcagcaaagatgaaaaggac
aaacccttggtgggatttctttcacgcaattttcaggaggagaaaaataaagcagctgct
ttaaaaaatgcttatgtcttaatgggaagacatcaactggggctggctattgctttcttt
ctacttggtggtgataattattctgcaattactgtttgtgcaaagaatttaggagatgaa
cagcttgccttggtaatttgtcgactcattgagggtcgtggtggaccattagaacatcac
ctgattacaaagtttgcacttccatctgcaactgagagaggcgattattggctcgcaagc
cttctcaagtgggaattgggcaattattttgagtcttttcttaccatgctcggtttccca
aaaaattgtgtgcttggaaaatctgcactttcatccaataatgctgcttttatggatcct
catatcggattacactgcctcatattagcaaataaatattgcatgagaaatgccataggg
gagcgaaatgctgcaatccttggtaggtgggcaacttatatggcggctactgccttcaat
agaagtgggcttcctctggaagctttggagtgcctctcatcttcctcaagtaattctggg
aatatagatcaagggagtatctcagatgttgatggttctcaaattcttcatgtaatttta
aagccatctgctagtgattctgtgaattggctgtcaagaaatgtagctttgcatctggag
tcctgtgctaaattagatttggctcttcagtatttctcaaaattgatgggggaacatcct
agttggcctgacactatcatagggtctgttcaactcagttcgcatgtcaaggactgtgag
gttcatcaatttaaaaaattgttagaaaattttcaagaaaaactctatacgggaatttca
aagtttgagcagaaatttttagtggtttcttcttgcttaattaaaatgattttagtctgg
ttgcataataatggatcattatttactggatatgacatattatttggctatacttctcaa
tatcacttacaagatgagagccgttctgttggcaattcagtcttgtatcctcttcttcat
aagacacttttggaatctgttcaagatatttcccttttactttcacgattcatcgtctca
tgtagcataaattccttgcaaccttttgaaaataatgaaactgttgaaactagatcatgg
tcagatacgcaggggcattacttccaaggtatcatgtcgatgttgtggagtttaaggaca
gctgtgaggagtgtctctggattatcatctgaggatgtcacagcaaggtcccttgttcta
cttgatttatttgaattttatgtacatttcgcgtctgcttggcttcagcgaaactccaaa
ggtctcttgttgatggtgcaacctctattaatcacttgtactaatgggcataccccttat
gaagttgatataacgaatctcaagaacattctttaccacattgcagagttgttgggtagc
aatttgtctgtgaatgatacaggagtagggcatatagttgctaattgtatgccatctaca
caagacagagaaacaatgcactcattctcagaagatgaaaaatggcatgtcatcgggaca
tgcttgtggcagcacctgtccagattattgaaacataaactacatttgctatctattaat
attgaagatgattgcttctctggagtttcccatggcttaatttcttcgtggccatctggt
tcaattggatctgatgacaccatgaaaaaagaaattatgtcattttcattgatattggcc
aagttactgaaaattacaattctacacgtttcatcttatcatgtaaaaatatttgggtcg
ctcctccagttgaaagtagagaatgaattgcacatgacaactttgacatggctaaaagat
tctattgcatctcaggccgaagtcctctatcaggatgctagtgcagacataatgaacagc
aaagatgaattatcaacttttgatattttgtgggacacctgtgctgatcctaacattgta
tctgaaggttttgcactagaaaaaataaattggtctgagtttttcaatcgtagatcatct
caaagctggagtaaattctacaaaatcattagaggggagtatgaaaccagggaaggtttg
gatcatgaagtcagattgagtactaatcgttccagcgatgaggttgagtcacctggtaag
ggtttatttaagaatgggcgagctgttctaactacctggcagaaggatgcaactatttcc
aaggaggagacacttttccaaaatgctaaagaaatatataagagagacggagagctgttg
gaggcactttgtgtgaactctgtcaatgaagggcaagctgcaattgctagcaaccgaaag
ggcattattttcttcagttggaaagatggggttacctttgtcgataaatcagaatacatc
tgggctgatgctgattggccaccaaatggttgggctggtgctgaatcaacacctgttcca
acttctgtttctcctggtgttggtcttgggagcaagaaagggtcacaccttggtttggga
ggggcaacccttggcacaggttctttagctagaccaaggagagacttaacaggtggtgga
gcatttggtattccaggttatgctggtatcggtgcatctggcttaggttgggaagttcaa
gaggatttcgaggagtttcttgacccaccagctaccgtggaaacaataagtacaagggct
ttttctagtcacccctcaagatccttctttttggttggttccagcaatacacatatttac
ttgtgggagtttggtaacaataaagccactgcaacttatggtgtcctccctgctgcaaat
gttcctccaccgtatgccctagcatcggtatccgctttgcagtttgacccctgtgggcac
aggtttgcttcagctgcactagacggaactgtatgcacatggcagctggaggttggagga
aggagtaatatccacccaacagaatcatctctctgctttaatggctatgcatcggatgtt
acatatgttacatcaagcggatcagttgttgcagcagctggatacagtgctaatggtgtt
aatgctgtagtctgggacacgttggctccgcccacaacctcacaagcttcaattatttgt
catgaaggcggtgctcgctccatttctatgtttgataatgacattggaagtggttctgta
tctccccttattgtaactggaggtaaaggtggtgatgttggacttcatgactttcggtac
atagcaaccggaaggactaaaaggcataagcatttcgataaccgtgatagaagcagcaat
ctgccttctaatcccgacttgcaagcaggggctggtgacaaagttggtggccagaatcag
aatgggatgctttggtacataccaaaggcacacttaggaagcgttaccaaaatatccacc
atcccacataccagcttattcttaactggaagtaaagatggagatgttaagctttgggat
gccaaagcagcacagcttgtctatcactggcccaaattgcatgaaaggcgcacctttctg
caacccagttcacgaggttttggtggagttgttaggcctgcggttacagatatacaagtt
gtttctcatggttttcttacttgtggttgggatggatctgtaaagttggttcagcttaaa
gatcaccagcatgagacataa
DBGET
integrated database retrieval system
