Ricinus communis (castor bean): 8263918
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Entry
8263918 CDS
T01087
Name
(RefSeq) E3 ubiquitin-protein ligase UPL3
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
8263918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rcu04121
]
8263918
Enzymes [BR:
rcu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
8263918
Ubiquitin system [BR:
rcu04121
]
Ubiquitin ligases (E3)
HECT type E3
8263918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
TPR_TRIP12_N
ARM_ARMC5
Arm
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
8263918
NCBI-ProteinID:
XP_048234245
LinkDB
All DBs
Position
8:complement(4249935..4261781)
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AA seq
1899 aa
AA seq
DB search
METRSRKRAEASSTAPSSSSSGPTTRSQKRSRLSSTSAAPVTTTAPSPAPSRTRPTRAHP
MDPTANSNTPVESSSSSSRSRRNNKNPESSSSDKGKEKEHEVRVRDNKDNSNLGLNMESG
NNINNNNNNVNEDDDNDSEEGGGIGAFHHNLTSASSALQGLLRKLGAGLDDLLPSSGMPS
ASSSHQSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGL
LNHESNPDIMLLAARAITHLCDVLPSSCAAVVHYGAVSCFVARLLTIEYMDLAEQSLQAL
KKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPL
LTNLLQYHDAKVLEHASVCLTRIAEAFASAPEKLDELCNHGLVTQAASLISTSNAGGGQA
SLSPPTYTGLIRLLSTFASGSPLGAKTLLLLEISGILKDILSGSGVSANSSVPPALSRPA
EQIFEIVNLANELLPPLPQGTISLPASSNVFVKGPVVKKSPSSSSGKQDDLNGNVPEVSA
REKLLKDQPELLQQFGMDLLPVLLQIYGSSVNSPVRHKCLSVIGKLMYFSSAEMIQSLLS
ITNISSFLAGVLAWKDPHVLVPALQIAEILMEKLPGTFSKMFVREGVVHAIDQLVLAGNP
STTPTQAPSTEKDNDYVSGTSSRSRRYKRRSGNSNAEGSLLEESRSPIPTNVGSPPSSVE
IPTVNSSLRMAVSTCAKSFKDKYFPSDPGASEVGVTDDLLHLKNLCMKLNVGVDDQKTKA
KGKSKASESRGIDGSINKEEYLIGVISDMLAELRKGDGVSTFEFIGSGVVAALLNYFSCG
YFSKERISEANLSKLRQQALRRFKLFVALSLPYSTNAGSAAPMAVLVQKLQNALSSLERF
PVVLSHSSRSSGGSARLSSGLSALSQPFKLRLCRAQGEKSLRDYSSNVVLIDPLASLAAV
EEFLWPRVQRGESDQKPSASVGNSESGTTPAGAGALSPSASTPSTTRRHSSRSRSSVNID
AARKEPLQEKSTSSSKGKGKAVFKPAQEEAKGPQTRNVARRRAALDKDAQMKSVNGDSSS
EDEELDISPVEIDDALVIEDDDISDDEDDDHEDMLRDDPLPVCMPEKVHDVKLGDAPEDS
SGAPATSDSQTNPASGSSSRAATVRGSESTDFRGGSSYGSRGAMSFAAAAMAGLATANGR
GIRGGRDRQGRPLLGGSSDPPKLIFTAGGKQLNRHLTIYQAIQRQLVLDEDDDDRYAGSD
FISSDGSRLWSDIYTITYQRADGQPDRVSVGGSSSTTSKSTKTGSSNSDGQLHQMSLLDS
ILQGELPCDLEKSNPTYNILALLRVLDGLNQLAPRLRAQLFSDNFAEGQISNLDDLSATS
SRVPAEEFVNSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTA
FGLSRALYRLQQQQGADGHGSANEREVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKA
VLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVVLGMWRSNSSSDKPSMEIDEDGNKNGKVN
NCSDAMGADVVQAPLGLFPRPWPPSADASEGSQFYKAVEYFRLVGRVMAKALQDGRLLDL
PLSTAFYKLVLNQELDLYDILSFDAEFGKVLQELHALVCRKRFLESSGTDNLDAISDLRF
RGTPIEDLCLDFTLPGYPDYILKPGDETVDINNLDEYISLVVDATVKSGIMRQMEAFRAG
FNQVFDISSLQIFSPQELDYLLCGRRELWEPETLVDHIKFDHGYTAKSPAIINLLEIMGE
FTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSSAGNAAATNGTGPSESADDDL
PSVMTCANYLKLPPYSTKEIMYTKLLYAINEGQGSFDLS
NT seq
5700 nt
NT seq
+upstream
nt +downstream
nt
atggaaactcgcagccggaagcgggcggaggcctcctcaactgccccttcttcttcttcc
tccggtcccacaactcgttctcagaaacgctcccgcctctcctccacgtcagctgcccct
gttaccactaccgccccctcccccgccccctctcgcactcgacccacccgcgctcatcca
atggaccccaccgcaaactcaaacacacctgtggaatcgtcatcgtcatcgtctcgctcc
cgtcgtaacaacaagaatcctgaatcgtcatcgtctgataaaggcaaagagaaagagcat
gaagttagggttcgagataacaaggataatagcaacctagggttaaatatggaatctgga
aataatattaacaataacaataataatgttaatgaggatgatgataatgacagcgaagaa
ggcggtggaattggggcttttcaccacaatctaacttcagctagcagtgctctacaaggc
ttgttacggaagcttggtgccggtcttgatgatctgctaccttcctctggtatgccatcc
gcttcgtcttcgcatcagtctggcagattgaagaagattttatcaggattgagggctgat
ggtgaggaagggaagcaggttgaggctttgactcagctttgtgagatgctttccattgga
actgaggagtctctgagcactttttctgtggattcatttgttccggtgcttgttggattg
ttgaatcatgagagtaatcctgatataatgttgctggctgcacgtgctattactcatttg
tgtgatgttttgccttcttcttgtgccgctgttgtgcattacggtgctgtttcatgtttt
gttgctaggttgcttactattgaatatatggacttggctgaacagtccttgcaagcactt
aaaaagatatctcaggagcatcctactgcatgtttgcgagctggtgctcttatggcggta
ctttcttatctggatttcttctccacgggagtccagcgagtagcgttatccactgctgca
aatatgtgcaagaaactcccttcagatgccgctgattttgtgatggaagctgttccgctg
ttgacaaatcttcttcagtatcatgatgcaaaggtattggagcatgcttctgtttgtttg
acccggattgctgaagcttttgcttcagcgcctgaaaaattggatgaactatgcaatcat
ggactggttactcaagcagcttctctgatttccactagtaatgccggtggtggacaagct
tctctaagcccacctacatacacaggcttaattcgactgttgtccacatttgcaagtggg
tcccctcttggagcaaaaactttacttctcctagaaatcagtggtattcttaaggatata
ctttcaggatctggtgtctctgctaactcgtcagtccctccagctctaagtagaccggca
gaacagatttttgagattgtgaacctagcaaatgagcttctccctccacttccacaagga
acaatctctctccctgccagctccaatgtttttgtgaaaggacccgtggtaaagaagtca
ccttcaagtagttctgggaaacaggatgatcttaatggaaatgttcctgaggtttcagct
agagagaaattgttaaaggatcagccagagctgttgcagcaattcggaatggatctcctc
cctgttctattacagatatatggttccagtgtcaacagtcctgttcgccacaaatgtctt
tcagttattggaaagttgatgtatttcagcagtgcggaaatgattcagtctttattgagc
atcacaaacatatctagtttcttagctggggtcttggcatggaaagatcctcatgtcttg
gttcctgccctccaaattgctgaaattcttatggaaaagcttcctggaactttctccaag
atgtttgtcagagaaggtgtggttcatgctatagatcaacttgtcttggctgggaatcca
agtaccactcctacccaagcaccttccactgagaaggataatgattatgtatctggaaca
tcatcccgttctaggcgctacaaacgccgcagtggcaattcaaatgctgaaggaagctta
ttagaagaatcccggagtcctattccaacaaatgttggatcacctccaagttctgttgaa
atcccaacagttaattccagccttcgcatggcagtcagtacatgtgccaagtcttttaaa
gataagtattttccatcagatcctggtgcttctgaagttggggttactgatgatctcttg
catttaaaaaatctttgcatgaagttgaatgttggtgttgatgaccaaaagactaaagca
aaaggaaaatctaaagcttctgagtctcgtggcattgatggttctattaataaggaagag
tatttgattggtgtgatatctgatatgctggcagaactaagaaaaggggatggtgtatcc
acatttgagtttattggcagtggggttgtggcagcattgctgaattacttctcttgtggt
tacttttccaaggagagaatatcagaagctaatctgtccaagcttcggcaacaggcactt
agacgattcaagttatttgttgccctttcccttccttatagtactaatgcagggagtgca
gctcccatggctgtcttggttcagaagcttcaaaatgccctgtcgtccttggaacgcttt
cctgttgttttgagtcattcgtctaggtcatccggtggaagtgcacgtctctcatctgga
ttaagtgcactgtctcaaccttttaagctgcgcctttgtcgagcccagggtgaaaagtct
ctccgtgattattcttccaatgtagttcttattgatccattagcgagtttagcagctgtt
gaagagtttctttggccccgagttcagcgaggtgaatctgatcaaaagccctcagcttct
gtgggaaattctgaatctggtactacacctgctggagctggtgcattgtctccatctgct
tccactccttcaaccactcgccgtcattcttcaagatcaagatcatctgttaatatagat
gcagctagaaaggaaccattgcaggagaaaagcacaagttcatctaagggaaaggggaaa
gctgtttttaagcctgcccaggaggaggcaaaaggacctcaaactagaaatgtggctcgt
agaagagcagcccttgataaagatgcgcagatgaaatcagtgaatggggattctagttct
gaggatgaggaattggacatatctcctgttgagattgatgatgctttggtgattgaagat
gatgatatctctgatgatgaggatgatgatcacgaagatatgttaagagatgatccgcta
cctgtttgcatgccagaaaaagtacacgatgtgaagttgggtgatgcccctgaagatagc
agtggtgcaccagccacaagtgatagccaaactaatcctgcttctggttctagcagcaga
gcagctacagttaggggctcagaatctactgattttaggggtggcagctcttatggctca
aggggtgctatgtcatttgctgctgctgctatggctggtcttgcaactgctaatggcaga
ggtatccgaggaggcagagatcgacaaggaagaccactattgggtggttctagtgaccct
ccaaaattaatctttactgctggagggaagcagctaaataggcatttgacgatctatcag
gccattcaaagacagcttgtgctggatgaggatgacgatgacaggtatgctggcagtgat
ttcatctctagtgacggaagcaggctgtggagtgacatatataccattacataccagagg
gcagatggccaacctgatagagtttctgttggtggctcaagttctaccacatcgaagtcc
acaaaaactggttcttcaaattctgatggccaattgcatcagatgtccttgttagatagc
atcttgcaaggggagcttccctgtgacttggagaaatctaatcccacttataatattttg
gcactgcttcgtgtactagatggtttgaaccagctggcaccacgcctgagagcgcagcta
ttttcagacaattttgctgaggggcaaatctcaaatttggatgatctgagtgccactagc
agtagggttcctgctgaagaatttgttaacagcaagctcactcctaaattagctcgccag
attcaggatgcccttgcattatgcagtgggagtctgccatcctggtgttaccagttgaca
aaagcgtgtccattcttgttcccttttgagacccgtcgacagtacttctattctactgct
tttggattgtctcgtgcgttgtatcgtcttcagcagcagcagggtgctgatggtcatgga
tcagcaaatgaaagagaggtgagggttgggagattacaacgccagaaagtccgtgtttct
cgaaaccgcattttggattctgctgccaaagtaatggagatgtattctagtcagaaggct
gtgcttgaagtggaatattttggtgaagttggcacaggtttgggccctaccttagagttc
tacacacttttgagccatgatctacaaaaggttgtgcttggaatgtggaggtcgaattca
tcatctgacaaaccatcaatggaaattgatgaagatggaaacaagaatgggaaggtcaac
aactgttctgatgctatgggcgctgatgttgtccaagctccacttggtttatttcctcgt
ccttggcccccaagtgctgatgcttctgagggtagccagttttataaggctgttgagtat
tttcggctggttggtcgtgtgatggcaaaagctcttcaagatgggcgtcttttggaccta
ccactttccacagcattttataagcttgtgcttaatcaagagcttgatctgtatgatatt
ctctcttttgatgcggaatttgggaaggttttgcaagaattgcatgcccttgtttgcagg
aaacggttcctagaatcttcaggaactgataatcttgatgcaatttctgatttgcgtttc
cgagggactccgattgaagatctctgcttggattttaccctccctggttatcctgactac
attctaaaacctggagatgaaactgttgatataaataacttggatgagtacatatctttg
gtggttgatgcaacagtgaagtctgggattatgcgacagatggaagcatttagagctggg
tttaatcaggtttttgacatctcatccttacaaatattttccccacaagaattggactat
ttgctttgtggccgtcgggagttatgggagcctgagacccttgttgatcacattaaattt
gatcatggatacactgccaagagtcctgcaatcattaatttacttgagatcatgggagag
ttcacaccagagcagcagcgtgccttctgccaatttgttactggtgcaccaaggttacct
cctggtggtctagcagtattaaatccaaagttaaccattgtgaggaagcattcttcatct
gcagggaatgcagcagcgacaaatggaactgggccttcagaatcagcggatgatgacttg
cctagtgtcatgacctgtgctaactatctgaagcttcctccatactccaccaaggaaata
atgtacacgaagctactatatgcaatcaatgaagggcagggatccttcgatttgtcatga
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integrated database retrieval system
