Ricinus communis (castor bean): 8265573
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Entry
8265573 CDS
T01087
Name
(RefSeq) transcription initiation factor TFIID subunit 6
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
8265573
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcu03021
]
8265573
03036 Chromosome and associated proteins [BR:
rcu03036
]
8265573
Transcription machinery [BR:
rcu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
8265573
Coactivators
SAGA/TFTC/STAGA complex
8265573
Chromosome and associated proteins [BR:
rcu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
8265573
STAGA complex
8265573
TFTC complex
8265573
SAGA complex
8265573
SLIK complex
8265573
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
CBFD_NFYB_HMF
TFIID-31kDa
CDKN3
Motif
Other DBs
NCBI-GeneID:
8265573
NCBI-ProteinID:
XP_002528944
UniProt:
B9SSH5
LinkDB
All DBs
Position
7:22292089..22302147
Genome browser
AA seq
542 aa
AA seq
DB search
MSIVPKETIEVIAQSIGITNLSEDAALSLAPDVEYRMREIMQEAIKCMRHSKRTTLTCYD
VDGALNLRNIEPVYGVASGGALQFKRAIGHRDLFYIDDKDIDFKDVIEAPLPKAPLDTSI
VCHWLAIEGVQPAIPENAPLEVIAPPPDGKNNELKDGLPVDIKLPVRHVLSRELQLYFDK
ITELTMRRSDLPLFKEALVSLATDPGLHPLVPYFTCFIADEVSRSLSDFQLLFALMRVVR
SLLQNPHIHIEPYLHQLMPSVVTCLVAKRLGNRFADNHWELRDFTANLVASICKRFGHVY
SSLQTRLTKTLLNALFDPKRSLTQHYGAIQGLAALGPNVVRFLVLPNLKPYLQVLEPEML
LEKQKNEMKRHEAWLVYGALLNAAGQCLYDRLKLFPLFPSPPAHAVWRTNGKIITAQLNK
RKASMQPAEQPLPKRIATDDPVNALSTDSSPSRMQWEATTPVPSSDTNASASTSSEQMPT
NHESDCKTERVKGDGGVMKTSAILNQVWKDDLKSGQLLASLFELFGEGILSFIPSPEMSL
FL
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgagtatagttccgaaggaaacaatagaggtaatagcacaaagcatcggtatcaccaat
ttaagcgaagatgcagctctctctctcgctcccgacgttgaatatcgaatgcgtgaaatc
atgcaagaagcaattaaatgtatgcgccattctaaaaggactaccttaacttgttatgat
gttgatggtgctcttaacctaagaaacatcgagccagtgtacggcgtcgcatcaggaggt
gcattgcagtttaaaagagctattggtcatagggatttattttacattgatgacaaggat
attgattttaaggatgtgattgaagctcctctaccaaaagcaccgcttgatacttctatt
gtttgtcattggctggctattgaaggtgtacaacctgctatccctgaaaatgctcctttg
gaagttattgcacctcctcctgatggcaaaaacaatgaactaaaggatggactaccagtt
gatatcaaactgccagttaggcatgtattatctagggagctacagctgtactttgataaa
atcacagagcttacaatgaggagatcagatttaccccttttcaaagaagcattagttagt
ttggctactgacccaggacttcatccattggttccttatttcacatgcttcattgctgat
gaggtttctcgtagtttaagtgattttcaacttctctttgctttgatgcgtgttgttcgg
agtcttctacagaatcctcacatacatattgaaccttatctacatcagctgatgccatct
gtggtcacctgccttgttgcaaaaaggttggggaatagatttgcagataaccactgggag
ctcagagacttcacagctaacttggttgcctcaatatgcaaaagatttggtcatgtttac
agcagtcttcagacgcgtttgacaaaaactttgcttaatgcactttttgacccaaaacgg
tcacttactcaacactatggtgcaattcaagggttggcagccctaggacccaatgtggtt
cgttttcttgtgcttccaaacctcaagccttatctccaagttcttgaaccagagatgctg
cttgaaaagcaaaagaacgagatgaagaggcatgaagcttggctcgtttatggagcactg
ttgaatgcagcaggtcagtgcttatatgaccgcctcaagcttttcccacttttcccatca
cctccagcacatgctgtgtggaggaccaatggaaaaatcattactgcacaattaaataaa
cggaaggcaagcatgcagcctgcagaacaaccactcccgaagaggatagcaactgatgat
ccagtcaatgcattgtccactgactcatcaccttctcgtatgcaatgggaagcaaccaca
ccagttccttcaagtgatactaatgcgagtgcatccacatcttctgaacagatgccaacc
aatcatgaatcagactgcaaaactgaaagagtcaagggagatggtggagttatgaagaca
tcagctattctcaatcaagtatggaaggatgacttgaaatctggtcagttgctggcatca
ctgtttgagctatttggggaaggtattctgtccttcattccatctcctgagatgtcatta
ttcttatga
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