Ricinus communis (castor bean): 8266405 Help Entry 8266405           CDS       T01087                                  Name (RefSeq) E3 ubiquitin-protein ligase COP1   KO K10143   E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27] Organism rcu  Ricinus communis (castor bean) Pathway rcu04120   Ubiquitin mediated proteolysis rcu04712   Circadian rhythm - plant Brite KEGG Orthology (KO) [BR:rcu00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     8266405  09150 Organismal Systems   09159 Environmental adaptation    04712 Circadian rhythm - plant     8266405  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04121 Ubiquitin system [BR:rcu04121]     8266405 Enzymes [BR:rcu01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      8266405 Ubiquitin system [BR:rcu04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    Other single Ring-finger type E3     8266405   Multi subunit type E3    Cul4 complex     Target recognizing subunit (DCAF)      8266405 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_EIPR1 zf-C3HC4_2 Beta-prop_DCAF4 Beta-prop_WDR19_1st WD40_MABP1-WDR62_2nd Beta-prop_HPS5 EIF3I WD40_MABP1-WDR62_1st Beta-prop_TEP1_C WD40_RFWD3 Beta-prop_WDR90_POC16_2nd zf-C3HC4 Beta-prop_EML WD40_like ANAPC4_WD40 Beta-prop_CAF1B_HIR1 zf-RING_2 zf-C3HC4_3 Beta-prop_WDR75_1st Beta-prop_WDR35_TULP_N zf-C3HC4_4 zf-RING_UBOX Beta-prop_DCAF12 U-box Beta-prop_SCAP DUF1664 Beta-prop_IFT122_1st Beta-prop_IFT122_2nd zf-RING_5 zf-RING_6 zf-RING_10 zf-Nse Motif Other DBs NCBI-GeneID:  8266405 NCBI-ProteinID:  XP_002534127 UniProt:  B9T7A8 LinkDB All DBs Position 7:complement(22053708..22060856) Genome browser AA seq 677 aa AA seqDB search MEEVSTGAIVPAVKLEPRPSSSSVAVAAAVSSEPAAAEEEEAGLSELEKDFLCPICMQII KDAFLTACGHSFCYMCIITHLRNKSDCPCCTHYLTTNQLFPNFLLQKLLKKASARQTSKT ASPVEHFRHALQQGCEISIKELDTLMSMLSEKKRKMEQEEAERNMQILLDFLHYLRKQKV DELNEVRTDLQFIKEDIEAVEKHRIELYHARDRYSMKLRMLGDDPNARKPWSPTIEKSNG GVISNAFNVRGGMITGNLPTKKMDGKAQVSSHGLQRKDSLSGSDSQFNHSGLSVVRKKRV HAQFNDLQECYLQKRRQMANQLHNQQDKDKNVMHREGYSTGLLDFQSVLSTFTQYSRLRV IAELRHGDIFHSANIVSSIEFDRDDELFATAGVSRRIKVFDFSTVLNDPADVHCPVEEMS TRSKLSCLSWNKYAKNQIASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSRTEPSM LVSGSDDCKVKVWCTNQEASVLNIDMKANICCVKYNPGSSNYIAVGSADHHIHYYDLRNV SHPLHVFSGHRKAVSYVKFLSNSELASASTDSTLRLWDVKENLPVRTFRGHTNEKNFVGL SVNRDYIACGSETNEVYVYHKEISRPVTWHRFGSPEMDDADEDAGSYFISAVCWKSDSPT MLTANSQGTIKVLVLAA NT seq 2034 nt NT seq  +upstreamnt  +downstreamnt atggaagaggtttcaacaggagcaatagtcccggcagtgaagctagagccaaggccatct tcttcctccgtcgccgtcgccgcagcagtttcgtcggagcctgccgcggcggaggaggag gaggcggggttgtcggagttggaaaaggatttcttgtgtccgatttgtatgcaaataata aaagacgcgtttctaacagcttgtggacatagtttttgttatatgtgtattattactcat cttcgtaacaaaagtgattgcccttgctgtactcattatctcactaccaatcagctcttc cctaatttcttgctccagaagctattaaagaaggcttctgctcgtcaaacttcgaaaact gcatctcctgttgagcattttcgccacgcattacaacagggctgtgaaatttcaattaag gagctggacaccctcatgtcgatgctttccgagaagaagagaaaaatggagcaggaagaa gctgagaggaatatgcaaatattgctagacttcttacattacttacgaaagcaaaaagtt gatgaattaaatgaggtacggactgatctccagtttattaaggaggacatagaggcagta gagaaacatagaattgagttatatcatgctagggatagatattctatgaaattgaggatg cttggagatgatcccaatgcgagaaaaccttggtctccaacaatagagaagagcaacggc ggtgtgattagcaatgcttttaatgtaagaggaggaatgattacagggaaccttccaacc aagaaaatggatggtaaggctcaagtaagctctcatgggcttcaaagaaaggattcgtta agtgggtctgactctcaatttaatcattctgggttatctgttgtaaggaaaaagcgagtc catgcacagtttaatgacctacaagagtgttacctacaaaagcgtcgtcagatggctaac caactgcataaccagcaagacaaggataaaaatgtcatgcatagggagggatatagtaca ggtcttttggattttcaatctgtccttagtaccttcactcagtacagtcggttaagggtc attgctgagctcagacatggtgatatattccactcagccaatatagtgtcaagcatagaa tttgaccgagatgatgaattgtttgctactgctggagtctcgaggagaatcaaagttttt gacttctccacagttctgaatgaccctgcagatgtgcattgccctgttgaggagatgtca acacgttctaaacttagttgcttgagttggaacaagtatgctaagaatcagatagctagt agtgattatgaaggaatagttactgtttgggacgtgacaaccaggcagagtgtgatggaa tatgaagagcatgaaaaacgtgcatggagtgttgatttttctcgtacagagccctcaatg cttgtatcgggcagtgatgattgtaaggtcaaagtttggtgcacgaatcaggaagctagt gttctcaacattgacatgaaagcaaatatttgttgtgtcaagtataatcctggatctagc aattacattgcggttggttcagcagaccaccatatccattactatgacttgagaaatgtt agccatccgctccatgtattcagtgggcataggaaagcagtatcatatgtcaaattcttg tctaacagtgagcttgcttcggcgtctacagacagtactttacgattatgggatgtgaag gagaatctgcctgttcgtacattcagaggccacacaaatgagaaaaattttgtgggtcta tctgtcaatcgtgattacattgcatgtgggagtgaaacaaatgaagtgtatgtctaccac aaggaaatttcaagacctgtgacatggcatagatttggttcaccggaaatggacgatgct gatgaggatgcaggatcgtacttcattagtgctgtctgctggaagagtgatagtccgaca atgctaacagcaaatagccagggtacaataaaagtattagttcttgcagcttaa

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