Ricinus communis (castor bean): 8266405
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Entry
8266405 CDS
T01087
Name
(RefSeq) E3 ubiquitin-protein ligase COP1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu04120
Ubiquitin mediated proteolysis
rcu04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
8266405
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
8266405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rcu04121
]
8266405
Enzymes [BR:
rcu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
8266405
Ubiquitin system [BR:
rcu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
8266405
Multi subunit Ring-finger type E3
Cul4 complex
Target recognizing subunit (DCAF)
8266405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
zf-C3HC4_2
zf-C3HC4
WD40_like
ANAPC4_WD40
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_UBOX
U-box
DUF1664
zf-RING_5
zf-RING_6
zf-RING_10
zf-ANAPC11
zf-Nse
Motif
Other DBs
NCBI-GeneID:
8266405
NCBI-ProteinID:
XP_002534127
UniProt:
B9T7A8
LinkDB
All DBs
Position
7:complement(22053708..22060856)
Genome browser
AA seq
677 aa
AA seq
DB search
MEEVSTGAIVPAVKLEPRPSSSSVAVAAAVSSEPAAAEEEEAGLSELEKDFLCPICMQII
KDAFLTACGHSFCYMCIITHLRNKSDCPCCTHYLTTNQLFPNFLLQKLLKKASARQTSKT
ASPVEHFRHALQQGCEISIKELDTLMSMLSEKKRKMEQEEAERNMQILLDFLHYLRKQKV
DELNEVRTDLQFIKEDIEAVEKHRIELYHARDRYSMKLRMLGDDPNARKPWSPTIEKSNG
GVISNAFNVRGGMITGNLPTKKMDGKAQVSSHGLQRKDSLSGSDSQFNHSGLSVVRKKRV
HAQFNDLQECYLQKRRQMANQLHNQQDKDKNVMHREGYSTGLLDFQSVLSTFTQYSRLRV
IAELRHGDIFHSANIVSSIEFDRDDELFATAGVSRRIKVFDFSTVLNDPADVHCPVEEMS
TRSKLSCLSWNKYAKNQIASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSRTEPSM
LVSGSDDCKVKVWCTNQEASVLNIDMKANICCVKYNPGSSNYIAVGSADHHIHYYDLRNV
SHPLHVFSGHRKAVSYVKFLSNSELASASTDSTLRLWDVKENLPVRTFRGHTNEKNFVGL
SVNRDYIACGSETNEVYVYHKEISRPVTWHRFGSPEMDDADEDAGSYFISAVCWKSDSPT
MLTANSQGTIKVLVLAA
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggtttcaacaggagcaatagtcccggcagtgaagctagagccaaggccatct
tcttcctccgtcgccgtcgccgcagcagtttcgtcggagcctgccgcggcggaggaggag
gaggcggggttgtcggagttggaaaaggatttcttgtgtccgatttgtatgcaaataata
aaagacgcgtttctaacagcttgtggacatagtttttgttatatgtgtattattactcat
cttcgtaacaaaagtgattgcccttgctgtactcattatctcactaccaatcagctcttc
cctaatttcttgctccagaagctattaaagaaggcttctgctcgtcaaacttcgaaaact
gcatctcctgttgagcattttcgccacgcattacaacagggctgtgaaatttcaattaag
gagctggacaccctcatgtcgatgctttccgagaagaagagaaaaatggagcaggaagaa
gctgagaggaatatgcaaatattgctagacttcttacattacttacgaaagcaaaaagtt
gatgaattaaatgaggtacggactgatctccagtttattaaggaggacatagaggcagta
gagaaacatagaattgagttatatcatgctagggatagatattctatgaaattgaggatg
cttggagatgatcccaatgcgagaaaaccttggtctccaacaatagagaagagcaacggc
ggtgtgattagcaatgcttttaatgtaagaggaggaatgattacagggaaccttccaacc
aagaaaatggatggtaaggctcaagtaagctctcatgggcttcaaagaaaggattcgtta
agtgggtctgactctcaatttaatcattctgggttatctgttgtaaggaaaaagcgagtc
catgcacagtttaatgacctacaagagtgttacctacaaaagcgtcgtcagatggctaac
caactgcataaccagcaagacaaggataaaaatgtcatgcatagggagggatatagtaca
ggtcttttggattttcaatctgtccttagtaccttcactcagtacagtcggttaagggtc
attgctgagctcagacatggtgatatattccactcagccaatatagtgtcaagcatagaa
tttgaccgagatgatgaattgtttgctactgctggagtctcgaggagaatcaaagttttt
gacttctccacagttctgaatgaccctgcagatgtgcattgccctgttgaggagatgtca
acacgttctaaacttagttgcttgagttggaacaagtatgctaagaatcagatagctagt
agtgattatgaaggaatagttactgtttgggacgtgacaaccaggcagagtgtgatggaa
tatgaagagcatgaaaaacgtgcatggagtgttgatttttctcgtacagagccctcaatg
cttgtatcgggcagtgatgattgtaaggtcaaagtttggtgcacgaatcaggaagctagt
gttctcaacattgacatgaaagcaaatatttgttgtgtcaagtataatcctggatctagc
aattacattgcggttggttcagcagaccaccatatccattactatgacttgagaaatgtt
agccatccgctccatgtattcagtgggcataggaaagcagtatcatatgtcaaattcttg
tctaacagtgagcttgcttcggcgtctacagacagtactttacgattatgggatgtgaag
gagaatctgcctgttcgtacattcagaggccacacaaatgagaaaaattttgtgggtcta
tctgtcaatcgtgattacattgcatgtgggagtgaaacaaatgaagtgtatgtctaccac
aaggaaatttcaagacctgtgacatggcatagatttggttcaccggaaatggacgatgct
gatgaggatgcaggatcgtacttcattagtgctgtctgctggaagagtgatagtccgaca
atgctaacagcaaatagccagggtacaataaaagtattagttcttgcagcttaa
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