Ricinus communis (castor bean): 8266712
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Entry
8266712 CDS
T01087
Name
(RefSeq) pre-mRNA-processing factor 39-2 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
rcu
Ricinus communis (castor bean)
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcu03041
]
8266712
Spliceosome [BR:
rcu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
8266712
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_16
TPR_7
TPR_MalT
NRDE-2
TPR_12
Motif
Other DBs
NCBI-GeneID:
8266712
NCBI-ProteinID:
XP_002526546
UniProt:
B9SKM7
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All DBs
Position
7:23995424..24006869
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AA seq
829 aa
AA seq
DB search
MGDSEMIVAETSTVTEYASTGYTTTAGYGGDTASNVVPDSSVYSTEGTGGFSSSADAAYT
MPAYADPSSAVQGIHANAAYETKPDIGMGTTSENAAATQAPPLAAGYNSSINGNIGIEAG
ITSAENGIAADMGGEGAAAGQQFADGSVTPMSGEEERLWSIVKANSLDFDAWTALIDETE
KVAGDKILKIRKVYDAFLAEFPLCYGYWKKYADHEARTGYMDKIVEVYERAVLGVTYSVD
MWLHYCIFTINTYEDPDTIRRLFERGLAYVGTDYLSYPLWDKYIEYEEMHAEWSRVAMIY
TRILEIPNKRLDDFFNRFKAFAASHALSELRTAEEAAAATVLPVSSVGGDQANEGEVHPD
AAEQSSKPASAGLTEAEELEKYIAVREEIYKKAKEFDSKICDFETGIRRPYFHVRPLNVA
ELENWHNYLDFLEREDDLNKVVKLFERCLIACANYPEYWIRYTLCMEASGSMDLASNALA
RATQVFVKRRPEIHLFAARFREQNGDVPGARAAYQLVHTEIAPGLFEAVVKHANMEHRLG
NLKDACSLYEQAIAIEKGKEHSQVLPMLYAQYTRFLYLVSGNIDKAREILVEALENVQLS
KPLLEAFIHIESIQSLPKRIDYLDSLVDKFVMPNSDSLSAASATDREELSCIFLEFLGMF
GDAQSIKKADDRHAKLFLPHRSKSEFKKRHADDYLTSDKSKIAKPYGDAPSPVQSLMGAY
PSTQNQWAAGYGVQPQAWPPATQAQMQQWTPGYGQQAAYSTYGSYASSYTTPQAPTSAAQ
TATYGAYPPTYPAQQTFPQQSYAQPAATATMAPAQQAASVSQPYYGSYY
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgggagatagtgagatgatagttgctgagacatctacggtcacggagtatgcatccact
ggatatactactactgctggttatggtggtgatactgcctcgaatgttgttcctgattct
agcgtttattccactgagggtactggaggtttttcttcttctgctgatgcagcttatact
atgcctgcatatgcagatcctagttctgctgtacaagggattcatgccaatgcggcatat
gagactaagccagatattggaatgggcactactagtgagaatgcagctgctactcaggca
ccacctctagctgctggttacaattcttctataaatggcaatattggtattgaagcagga
attacatcagctgagaatggtattgctgcagatatgggtggggaaggtgctgctgctgga
caacagtttgcagatggctcagtgacaccaatgtcaggtgaagaagagcgattgtggagt
attgtgaaggctaattccttggactttgatgcatggactgccttgattgatgagacagag
aaggtggcaggggacaagatattgaaaattcgaaaagtatatgacgcttttttagctgaa
ttcccattgtgttatggttattggaagaaatatgcagatcatgaggcacgcactggttat
atggacaaaattgtggaggtatatgaacgagctgttctaggggtgacatattcagtggac
atgtggttgcattattgcattttcaccataaacacatatgaagatccagacactattaga
aggctttttgagcgaggattagcttatgttggaacagattatctgtcataccccctgtgg
gacaagtacattgaatatgaagaaatgcatgcagaatggagccgtgttgccatgatttac
acaaggatattagagattccaaataaacggttggatgattttttcaataggtttaaggct
tttgctgcaagccatgctttgtcagaattaaggactgctgaggaagctgctgctgctacg
gtactccctgtttcttcagtgggtggtgaccaagcaaatgagggcgaagttcatcctgat
gctgctgaacagtcttccaaacctgcaagtgctggcttaacagaagcagaggagctggag
aagtatatcgctgttagagaagagatatataagaaagctaaagagtttgattctaagata
tgtgattttgaaactggtattaggaggccttactttcatgtgcggccccttaatgttgca
gagcttgaaaattggcataattatctggattttttagaaagagaagatgatttgaacaag
gtggtcaagttatttgaaagatgcctaattgcttgcgccaactatcccgagtattggata
cgatataccttgtgcatggaagcctctgggagtatggatcttgctagcaatgcacttgct
cgtgcaactcaagtttttgtcaagaggcgaccagagattcacctttttgcagctcgattt
agagagcagaatggagatgtacctggtgcccgagctgcataccaacttgtacacactgaa
attgcacctggtctttttgaagcagttgtcaagcatgcaaacatggaacataggctggga
aacctcaaagatgcctgctctttatatgaacaagccatagctatagaaaaagggaaagag
cattcacaggtgttgccaatgctatatgcacaatacacccggtttctatatttggtttct
ggcaatatagacaaagctagggaaattctagttgaagcccttgagaatgtccaattatca
aaaccgcttcttgaggcttttatacatattgagtcgattcagtcactaccgaagcgaatt
gattatttagattcattagttgataagtttgtaatgcccaactcagacagcctcagtgct
gcaagtgctactgatagagaggagctatcttgcattttcttggagtttttgggtatgttt
ggagatgcacaatctattaagaaggctgatgatcggcatgccaagctcttcctacctcac
aggagcaagtcagagttcaaaaagcgccatgcagatgattatctaacttcagataagtca
aaaatagcaaaaccttacggtgatgctccttcacctgtgcagtctcttatgggtgcttat
ccaagcacacaaaatcagtgggcagctggttatggtgtacaacctcaagcttggccgcca
gctacacaggcacagatgcaacaatggactcctggctatggtcagcaggcagcatacagt
acatatggcagttatgcaagcagctatactactccacaggcacctacttctgctgcacaa
acagctacttacggtgcttatcctccaacatatcctgcccagcagacttttccccaacaa
agttatgcacaaccggctgctacagccacaatggccccagctcagcaggcggcttctgtt
tcacagccctattatgggagttactactaa
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