Ricinus communis (castor bean): 8267305
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Entry
8267305 CDS
T01087
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8267305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcu03041
]
8267305
03009 Ribosome biogenesis [BR:
rcu03009
]
8267305
Enzymes [BR:
rcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
8267305
Spliceosome [BR:
rcu03041
]
Complex A
U2 snRNP components
U2 related factors
8267305
Complex B
8267305
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
8267305
Ribosome biogenesis [BR:
rcu03009
]
Eukaryotic type
90S particles
Helicases
8267305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
nSTAND3
SRP54
ResIII
ABC_tran
T2SSE
AAA_30
FtsK_SpoIIIE
Flavi_DEAD
AAA_7
PhoH
AAA_33
TsaE
Motif
Other DBs
NCBI-GeneID:
8267305
NCBI-ProteinID:
XP_002515245
UniProt:
B9RNA6
LinkDB
All DBs
Position
1:8741390..8745484
Genome browser
AA seq
731 aa
AA seq
DB search
MGTDRKRKVSLFDVVDETSVSAKIAKSNGGGGAAMNNNGSSNSLINSWNGKPYSQRYYEI
LEKRKTLPVWHQKEEFLSVLKKNQVLILVGETGSGKTTQIPQFVLEAVDIETPDKRRKMM
IACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSAKTVLKYLTDGMLLREAMT
DPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQGYFNDA
PLMRVPGRLHPVEIFYTQDPERDYLEAAIRTVVQIHMCEPLGDILVFLTGEEEIEDACRK
ITKEISNMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPLNEGGPAGRKIVVSTNIAETS
LTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTE
KSFHQDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEMLNYLG
ALDDDGNLTKLGEIMSEFPLDPQMAKMLVVSPEFNCSNEILSVSAMLSVPNCFVRPREAQ
KAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYENFINHRALKAADNVRQQLVRI
MTRFNLKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCL
DHKPEWVIYSEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLDNFPNCEAKRVLEKLYKKR
EREKEESKNRK
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggataggaagaggaaggtcagcttgtttgacgtggtagacgagacttctgtc
tccgcaaagatcgcaaaatctaacggcggcggcggagcggcaatgaataataatgggagc
agcaacagtttaataaatagttggaacgggaagccttattcacagagatactatgagata
ttagagaagaggaagactctgccagtttggcaccaaaaggaggaattcttgtcggttttg
aagaaaaatcaggtccttattcttgtcggcgagactggtagcggtaaaaccactcagatt
cctcagtttgttttggaagcagtagacatagaaacaccagataaacgtagaaagatgatg
attgcatgcacccaacctcgtagagttgctgccatgtctgtttctcgacgtgttgctgag
gagatggatgttactattggtgaagaggttggttatagtatccgttttgaagactgtagc
agtgcaaaaacagttttgaagtacttaactgatggtatgcttttaagagaagcaatgact
gatccacttttagaacgatacaaggtaattatccttgatgaagctcatgaaagaactttg
gcaacagatgtgctattcgggcttcttaaagaagttttgagaaatagacctgatctgaag
ctagttgttatgagtgcaacactagaggctgagaagtttcagggttactttaatgatgca
cctttgatgagggttcctggtaggcttcatcctgtggaaattttctacactcaagatccc
gaaagggattatcttgaggcagcaattcggacagttgttcagatacacatgtgcgaacct
cttggagacatacttgttttcctcacaggtgaggaggagatagaagatgcatgccgtaaa
ataacaaaagagatttcaaatatgggggatcaggtagggccagtgaaagttgtgcctcta
tattcaactcttcctcctgccatgcagcagaaaatttttgaacctgctccacctcctctg
aatgagggtggccctgctggaaggaagatcgtggtgtcaacaaacatagcagaaacttct
ttgaccatagatggcatagtttatgttattgacccagggtttgctaagcaaaaggtttat
aacccaagagtgcgtgttgaatccttgttggtgtccccaatatcaaaggcaagtgctcac
cagaggtcagggcgtgctggaagaactcagccaggcaaatgcttcagactttatacagag
aaaagttttcatcaagatcttcagccacagacatatccagaaatactgcgatcaaacctt
gcaaatacagtcctaacactaaaaaaacttggaatagatgacttggtgcattttgatttt
atggaccctcctgctcctgagactttgatgcgggcattagagatgctaaattatttggga
gcattagatgatgatgggaacttgacaaagctgggagaaattatgagcgagtttccttta
gatcctcagatggcaaagatgctggttgtcagtcctgaattcaactgttcaaatgagatt
ctatcagtttctgcaatgctttcagtacccaattgctttgtccgccctagggaggctcaa
aaggctgctgatgaagcaaaagctagatttgggcacattgatggggaccacctgacactg
ttgaatgtctaccacgcgtataagcagaacaatgaagatccatcttggtgctacgagaat
tttatcaatcatcgagctctcaaggctgctgataatgtcagacaacagcttgtacgcatt
atgactaggtttaacctaaagttatgcagcactgacttcaacagccgcgactactatgtc
aacataaggaaggctatgctagctggatattttatgcaggttgcccatttggaacgcact
ggacattacctgacagtgaaggacaatcaagtggtgcacttacatccatcaaattgtctg
gatcacaagccggagtgggttatttatagtgaatatgtcctaacaagccggaacttcatt
cggacagtgacagatattcgtggtgaatggctagtagatatagcaccacattactatgac
ttggacaacttcccaaattgtgaggccaagcgtgttctcgagaagctttataaaaagcgg
gagagagagaaggaagagagcaagaacagaaagtga
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